Variant report

Variant	rs6960431
Chromosome Location	chr7:64257960-64257961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:64250473..64252663-chr7:64257719..64259262,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13222235	0.90[AMR][1000 genomes]
rs13233451	0.92[AMR][1000 genomes]
rs1525814	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2863989	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs34720106	0.86[AMR][1000 genomes]
rs35742014	0.86[AMR][1000 genomes]
rs35992336	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36061166	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718113	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67376101	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6944816	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6947291	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6964501	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6970011	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6972180	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979058	0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs71562926	0.82[AMR][1000 genomes]
rs73360608	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs73360612	0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs73360629	0.92[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7779988	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422405	chr7:63709739-64632341	Enhancers Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv427787	chr7:63741770-64419520	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	esv2764000	chr7:63766980-64275251	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
4	esv2755057	chr7:63819849-64345822	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv464518	chr7:63881238-64506904	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
6	nsv607312	chr7:63881238-64506904	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv888271	chr7:63961212-64295884	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
8	nsv888273	chr7:63990100-64291622	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
9	nsv888274	chr7:63990100-64331123	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
10	nsv888275	chr7:63990100-64468590	Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888276	chr7:63990100-64511564	Strong transcription ZNF genes & repeats Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
12	nsv888279	chr7:64094285-64331123	Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
13	esv3394685	chr7:64150166-64268675	Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv1022042	chr7:64226499-64566945	Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
15	nsv1026390	chr7:64240323-64414364	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
16	nsv888281	chr7:64250409-64295884	Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64255400-64259600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:64255400-64259600	Weak transcription	Lung	lung
3	chr7:64255400-64277200	Weak transcription	Aorta	Aorta
4	chr7:64255600-64259800	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr7:64255600-64260600	Weak transcription	Colonic Mucosa	Colon
6	chr7:64255600-64262000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr7:64255600-64266400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:64255800-64259000	Weak transcription	Fetal Intestine Large	intestine
9	chr7:64255800-64259600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:64255800-64259600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr7:64255800-64259800	Weak transcription	HUVEC	blood vessel
12	chr7:64255800-64262400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:64255800-64268400	Weak transcription	Right Ventricle	heart
14	chr7:64255800-64272600	Weak transcription	NHLF	lung
15	chr7:64255800-64278800	Weak transcription	Placenta	Placenta
16	chr7:64255800-64293200	Weak transcription	NH-A	brain
17	chr7:64255800-64293400	Weak transcription	Psoas Muscle	Psoas
18	chr7:64256000-64259600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr7:64256000-64259800	Weak transcription	Liver	Liver
20	chr7:64256000-64259800	Weak transcription	Rectal Smooth Muscle	rectum
21	chr7:64256000-64260200	Weak transcription	HSMMtube	muscle
22	chr7:64256000-64264000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr7:64256000-64285200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:64256000-64294400	Weak transcription	Fetal Kidney	kidney
25	chr7:64256200-64260200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr7:64256400-64258600	Weak transcription	A549	lung
27	chr7:64256400-64259200	Weak transcription	Duodenum Mucosa	Duodenum
28	chr7:64256400-64259200	Weak transcription	Osteobl	bone
29	chr7:64256400-64259400	Weak transcription	Thymus	Thymus
30	chr7:64256400-64259600	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:64256400-64259600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:64256400-64259600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr7:64256400-64259600	Weak transcription	Primary B cells from peripheral blood	blood
34	chr7:64256400-64259600	Weak transcription	Fetal Thymus	thymus
35	chr7:64256400-64259600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr7:64256400-64259800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:64256400-64259800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr7:64256400-64259800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr7:64256400-64259800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr7:64256400-64259800	Weak transcription	NHDF-Ad	bronchial
41	chr7:64256400-64260200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr7:64256400-64260200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:64256400-64260400	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr7:64256400-64261400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr7:64256400-64262000	Weak transcription	Stomach Mucosa	stomach
46	chr7:64256400-64262600	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:64256400-64263800	Weak transcription	Colon Smooth Muscle	Colon
48	chr7:64256400-64276800	Weak transcription	HMEC	breast
49	chr7:64256600-64258400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr7:64256600-64259000	Weak transcription	NHEK	skin

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