Variant report

Variant	rs6960457
Chromosome Location	chr7:139946766-139946767
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:139892039..139895727-chr7:139944006..139947763,3	K562	blood:
2	chr7:139945437..139948415-chr7:139949972..139952700,2	K562	blood:
3	chr7:139940812..139943469-chr7:139946696..139949074,4	K562	blood:
4	chr7:139875272..139877147-chr7:139946323..139948102,2	K562	blood:
5	chr7:139936676..139938301-chr7:139945159..139946778,2	MCF-7	breast:
6	chr7:139944677..139947328-chr7:139947657..139949736,2	K562	blood:
7	chr7:139929899..139933909-chr7:139945608..139947806,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4726761	1.00[JPT][hapmap]
rs73473584	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139939800-139953400	Weak transcription	Lung	lung
2	chr7:139941800-139953400	Weak transcription	Small Intestine	intestine
3	chr7:139942600-139950600	Weak transcription	Placenta	Placenta
4	chr7:139942800-139947400	Weak transcription	Left Ventricle	heart
5	chr7:139943600-139948400	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr7:139943600-139950600	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr7:139943800-139948800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr7:139944000-139959400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:139944200-139948200	Weak transcription	Fetal Intestine Large	intestine
10	chr7:139944800-139947000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr7:139944800-139948800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr7:139944800-139951800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr7:139944800-139953200	Weak transcription	Stomach Mucosa	stomach
14	chr7:139946400-139946800	Enhancers	K562	blood
15	chr7:139946600-139947200	Enhancers	Fetal Brain Male	brain
16	chr7:139946600-139947400	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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