Variant report

Variant	rs6960587
Chromosome Location	chr7:136656478-136656479
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12707340	0.83[ASN][1000 genomes]
rs13242881	0.83[ASN][1000 genomes]
rs1455860	0.82[ASN][1000 genomes]
rs1549330	0.83[ASN][1000 genomes]
rs2061174	0.82[ASN][1000 genomes]
rs2113545	0.83[ASN][1000 genomes]
rs2216860	0.81[ASN][1000 genomes]
rs73158771	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7799047	0.82[ASN][1000 genomes]
rs7807871	0.82[ASN][1000 genomes]
rs7808355	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7809341	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv528311	chr7:136650607-136680801	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	esv3390664	chr7:136656212-136659510	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136649400-136656600	Weak transcription	Fetal Stomach	stomach
2	chr7:136653200-136660400	Weak transcription	Fetal Heart	heart
3	chr7:136656000-136657000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:136656000-136657200	Enhancers	Colon Smooth Muscle	Colon
5	chr7:136656200-136656600	Weak transcription	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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