Variant report

Variant	rs6960762
Chromosome Location	chr7:26667542-26667543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10239510	1.00[EUR][1000 genomes]
rs10239612	1.00[EUR][1000 genomes]
rs10251237	1.00[EUR][1000 genomes]
rs17154201	1.00[EUR][1000 genomes]
rs60442558	1.00[EUR][1000 genomes]
rs7811388	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1021253	chr7:26653375-26669899	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26666400-26667600	Enhancers	Brain Germinal Matrix	brain
2	chr7:26666800-26667600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:26666800-26667600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:26667200-26667600	Enhancers	Brain Substantia Nigra	brain
5	chr7:26667200-26667800	Enhancers	Spleen	Spleen
6	chr7:26667400-26667600	Flanking Active TSS	Brain Cingulate Gyrus	brain
7	chr7:26667400-26667600	Flanking Active TSS	Brain Hippocampus Middle	brain
8	chr7:26667400-26667600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
9	chr7:26667400-26667600	Enhancers	Pancreas	Pancrea
10	chr7:26667400-26667600	Enhancers	Right Atrium	heart
11	chr7:26667400-26667800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:26667400-26667800	Enhancers	Placenta	Placenta
13	chr7:26667400-26667800	Enhancers	Lung	lung
14	chr7:26667400-26668000	Enhancers	Fetal Lung	lung
15	chr7:26667400-26668200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:26667400-26668200	Enhancers	Right Ventricle	heart
17	chr7:26667400-26668400	Bivalent Enhancer	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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