Variant report

Variant	rs6961805
Chromosome Location	chr7:98823369-98823370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10278443	0.85[ASN][1000 genomes]
rs11761427	0.92[ASN][1000 genomes]
rs13438315	0.92[ASN][1000 genomes]
rs59076200	0.92[ASN][1000 genomes]
rs73405165	0.92[ASN][1000 genomes]
rs73405169	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3433144	chr7:98777878-99060209	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv831068	chr7:98819572-99006481	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98802600-98823400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:98811000-98827600	Weak transcription	Right Atrium	heart
3	chr7:98821400-98824600	Enhancers	Stomach Mucosa	stomach
4	chr7:98821600-98823600	Enhancers	HMEC	breast
5	chr7:98822600-98823400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr7:98822600-98823400	Enhancers	NHEK	skin
7	chr7:98822600-98823600	Weak transcription	K562	blood
8	chr7:98822600-98826800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:98822600-98827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:98822800-98823800	Enhancers	Hela-S3	cervix
11	chr7:98822800-98824200	Weak transcription	HepG2	liver
12	chr7:98822800-98826800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:98823200-98823600	Enhancers	Gastric	stomach
14	chr7:98823200-98824600	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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