Variant report

Variant	rs6962745
Chromosome Location	chr7:129554605-129554606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:129552819..129555561-chr7:129563082..129564976,2	K562	blood:
2	chr7:129553150..129555406-chr7:129588626..129590214,2	MCF-7	breast:
3	chr7:129553929..129555431-chr7:129558253..129560539,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10216157	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10240142	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10242002	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10246707	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10249037	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10253233	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10261367	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10273782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1046691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10480805	1.00[JPT][hapmap]
rs10500121	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1526323	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17162050	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17162123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17162136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17162295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17639187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2037720	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28604351	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58857902	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62489374	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62489375	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62491492	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62491503	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62491504	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62491537	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6467267	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6979056	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73161641	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7789336	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7801603	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7803795	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9656386	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533849	chr7:129462947-129616625	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv831129	chr7:129525406-129702477	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:129516200-129584400	Weak transcription	Fetal Brain Male	brain
2	chr7:129518200-129557200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:129518200-129564600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr7:129530000-129587600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:129537000-129554800	Weak transcription	NHDF-Ad	bronchial
6	chr7:129539600-129554800	Weak transcription	Dnd41	blood
7	chr7:129541800-129559200	Weak transcription	Esophagus	oesophagus
8	chr7:129544800-129559400	Weak transcription	Lung	lung
9	chr7:129547000-129557200	Weak transcription	Colonic Mucosa	Colon
10	chr7:129547000-129563600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr7:129547400-129557000	Weak transcription	Fetal Lung	lung
12	chr7:129547400-129563600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:129547400-129576800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr7:129547600-129555600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr7:129547600-129558400	Enhancers	Primary T helper cells PMA-I stimulated	--
16	chr7:129548000-129557600	Weak transcription	HepG2	liver
17	chr7:129548400-129562600	Weak transcription	Hela-S3	cervix
18	chr7:129548800-129557200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:129549000-129554800	Weak transcription	HUVEC	blood vessel
20	chr7:129549000-129555600	Weak transcription	Liver	Liver
21	chr7:129549000-129556000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr7:129549200-129554800	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:129549200-129557200	Weak transcription	Fetal Brain Female	brain
24	chr7:129549200-129586800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:129549400-129555000	Weak transcription	Spleen	Spleen
26	chr7:129549400-129555400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr7:129549400-129555600	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr7:129549400-129556400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:129549400-129557400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr7:129549400-129580200	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr7:129549600-129555600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr7:129549600-129556000	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr7:129549800-129554800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:129549800-129555400	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr7:129549800-129555600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:129549800-129572800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr7:129549800-129577800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr7:129549800-129588200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr7:129550400-129560800	Weak transcription	Primary monocytes fromperipheralblood	blood
40	chr7:129550600-129555800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:129551000-129555000	Weak transcription	Thymus	Thymus
42	chr7:129551000-129555400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:129551000-129557000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:129551400-129558600	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr7:129551800-129554800	Weak transcription	Placenta	Placenta
46	chr7:129551800-129555000	Weak transcription	Fetal Thymus	thymus
47	chr7:129552200-129554800	Weak transcription	Fetal Muscle Leg	muscle
48	chr7:129552400-129554800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr7:129552400-129556000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:129552400-129564600	Weak transcription	HMEC	breast

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