Variant report

Variant	rs6964220
Chromosome Location	chr7:21917216-21917217
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2893060	0.91[ASN][1000 genomes]
rs34824239	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv830922	chr7:21793386-21964675	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21907400-21937200	Weak transcription	Fetal Thymus	thymus
2	chr7:21908400-21936600	Weak transcription	Primary T cells from cord blood	blood
3	chr7:21908800-21921200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:21910000-21939400	Weak transcription	Left Ventricle	heart
5	chr7:21910200-21925200	Weak transcription	Fetal Heart	heart
6	chr7:21910200-21925400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr7:21911200-21938400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr7:21916400-21933800	Weak transcription	Thymus	Thymus
9	chr7:21916800-21927400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:21916800-21935000	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:21916800-21936600	Weak transcription	Primary B cells from cord blood	blood
12	chr7:21917000-21917400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:21917000-21925600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr7:21917000-21936600	Weak transcription	Primary hematopoietic stem cells	blood
15	chr7:21917000-21938400	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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