Variant report

Variant	rs6964243
Chromosome Location	chr7:27428729-27428730
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10224966	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28357233	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28357239	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28357240	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28357242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28398483	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27427200-27429000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:27428000-27430200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:27428400-27429000	Enhancers	Fetal Muscle Trunk	muscle
4	chr7:27428400-27430200	Enhancers	Fetal Muscle Leg	muscle
5	chr7:27428600-27429600	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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