Variant report

Variant	rs6964809
Chromosome Location	chr7:21788758-21788759
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10216160	1.00[EUR][1000 genomes]
rs10233759	0.83[ASW][hapmap];0.82[MKK][hapmap]
rs10237398	1.00[EUR][1000 genomes]
rs10240964	1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10248932	1.00[EUR][1000 genomes]
rs10264533	0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10264852	1.00[EUR][1000 genomes]
rs10267599	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10274168	1.00[TSI][hapmap]
rs10280100	1.00[EUR][1000 genomes]
rs11982102	1.00[EUR][1000 genomes]
rs17145322	1.00[EUR][1000 genomes]
rs6946595	0.83[ASW][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs6956824	1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6959279	1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018133	chr7:21740118-22055283	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1016063	chr7:21740433-21808410	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:21782600-21798000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:21788200-21789400	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:21788200-21789400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr7:21788600-21789200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr7:21788600-21789400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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