Variant report

Variant	rs6964909
Chromosome Location	chr7:140048890-140048891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140042760..140044907-chr7:140048498..140050000,2	K562	blood:
2	chr7:140046838..140048938-chr7:140050078..140052698,2	K562	blood:

Variant related genes	Relation type
ENSG00000157800	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6464724	0.92[MEX][hapmap]
rs6961384	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022919	chr7:140043299-140120546	Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs6964909	PRSS1	cis	parietal	SCAN
rs6964909	PARP12	cis	parietal	SCAN
rs6964909	SLC37A3	cis	multi-tissue	Pritchard
rs6964909	CREB3L2	cis	cerebellum	SCAN
rs6964909	KEL	cis	parietal	SCAN
rs6964909	SLC37A3	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
4	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
5	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
6	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
7	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
8	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:140038000-140049000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:140038000-140060200	Strong transcription	Primary T cells from cord blood	blood
11	chr7:140038000-140061000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:140038200-140061200	Strong transcription	Fetal Stomach	stomach
13	chr7:140038600-140055600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:140038600-140056800	Strong transcription	Primary T helper cells PMA-I stimulated	--
15	chr7:140038600-140060400	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:140039000-140055800	Strong transcription	Liver	Liver
17	chr7:140039200-140060400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr7:140039400-140058600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:140039600-140054200	Strong transcription	Duodenum Mucosa	Duodenum
20	chr7:140039600-140057400	Strong transcription	Primary T cells fromperipheralblood	blood
21	chr7:140039800-140054800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr7:140039800-140055600	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr7:140040000-140056800	Strong transcription	Fetal Intestine Large	intestine
24	chr7:140040600-140055000	Strong transcription	Primary B cells from cord blood	blood
25	chr7:140040800-140053200	Strong transcription	Spleen	Spleen
26	chr7:140041200-140052600	Strong transcription	Thymus	Thymus
27	chr7:140042000-140084800	Weak transcription	Hela-S3	cervix
28	chr7:140043000-140058200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:140043000-140060400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr7:140043200-140049800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr7:140043200-140052600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr7:140043200-140058000	Strong transcription	Primary neutrophils fromperipheralblood	blood
33	chr7:140044400-140049000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:140044600-140049400	Strong transcription	H9 Cell Line	embryonic stem cell
35	chr7:140044600-140055600	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr7:140044600-140056800	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr7:140044800-140051400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr7:140044800-140057000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr7:140045000-140050000	Strong transcription	Primary hematopoietic stem cells	blood
40	chr7:140045200-140049800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr7:140045200-140050800	Weak transcription	Pancreas	Pancrea
42	chr7:140045600-140049000	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr7:140045800-140049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:140045800-140050000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr7:140045800-140050600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr7:140045800-140050600	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr7:140045800-140058200	Weak transcription	Esophagus	oesophagus
48	chr7:140046000-140076200	Weak transcription	Right Ventricle	heart
49	chr7:140046200-140052600	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr7:140046400-140056400	Weak transcription	Colonic Mucosa	Colon

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