Variant report

Variant	rs6964999
Chromosome Location	chr7:107198946-107198947
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107198384..107201175-chr7:107202662..107205691,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164597	Chromatin interaction
ENSG00000105865	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6946507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964242	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7790797	1.00[AFR][1000 genomes]
rs7799429	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033979	chr7:107003734-107877761	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
2	nsv1028571	chr7:107114479-107299723	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv539053	chr7:107114479-107299723	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv482365	chr7:107122401-107271861	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv608074	chr7:107179131-107260856	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107162200-107203400	Weak transcription	Fetal Kidney	kidney
2	chr7:107170200-107203600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:107172800-107200200	Weak transcription	Psoas Muscle	Psoas
4	chr7:107179400-107203200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:107185000-107200200	Weak transcription	Pancreas	Pancrea
6	chr7:107185000-107203600	Weak transcription	Gastric	stomach
7	chr7:107185200-107199800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:107185200-107203600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr7:107185200-107203800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr7:107186000-107200000	Weak transcription	Stomach Mucosa	stomach
11	chr7:107186000-107200200	Weak transcription	NHLF	lung
12	chr7:107186000-107203000	Weak transcription	Brain Germinal Matrix	brain
13	chr7:107186000-107203600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:107186200-107199800	Weak transcription	Small Intestine	intestine
15	chr7:107186200-107200000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr7:107186200-107203600	Weak transcription	Esophagus	oesophagus
17	chr7:107186200-107203800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr7:107186400-107200000	Weak transcription	Fetal Heart	heart
19	chr7:107186800-107203000	Weak transcription	A549	lung
20	chr7:107186800-107203600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr7:107187400-107203000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr7:107188000-107202400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:107188000-107203800	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr7:107188600-107199800	Weak transcription	Hela-S3	cervix
25	chr7:107190000-107203400	Weak transcription	Fetal Brain Male	brain
26	chr7:107192400-107200200	Weak transcription	Right Atrium	heart
27	chr7:107193200-107199000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr7:107193400-107199600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr7:107193600-107199000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:107193600-107203400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr7:107194800-107199600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr7:107195000-107203600	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr7:107195200-107200400	Weak transcription	Rectal Smooth Muscle	rectum
34	chr7:107195400-107201800	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:107195600-107200000	Weak transcription	Spleen	Spleen
36	chr7:107195600-107202000	Weak transcription	Left Ventricle	heart
37	chr7:107195600-107202800	Weak transcription	Brain Angular Gyrus	brain
38	chr7:107195600-107203400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr7:107195800-107200000	Weak transcription	GM12878-XiMat	blood
40	chr7:107195800-107201400	Weak transcription	Aorta	Aorta
41	chr7:107195800-107202600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr7:107195800-107202800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:107196600-107202600	Weak transcription	Colonic Mucosa	Colon
44	chr7:107196800-107200400	Weak transcription	HSMMtube	muscle
45	chr7:107197000-107200000	Weak transcription	Brain Anterior Caudate	brain
46	chr7:107197000-107202600	Weak transcription	Brain Hippocampus Middle	brain
47	chr7:107197200-107199800	Weak transcription	Osteobl	bone
48	chr7:107197200-107200000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr7:107197200-107200200	Weak transcription	Right Ventricle	heart
50	chr7:107197200-107202800	Weak transcription	Brain Cingulate Gyrus	brain

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