Variant report

Variant	rs6965333
Chromosome Location	chr7:128179344-128179345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:128179250..128182993-chr7:128185762..128188168,4	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1013514	0.80[AMR][1000 genomes]
rs101721	0.85[CHB][hapmap]
rs10241631	0.82[ASN][1000 genomes]
rs10488628	0.85[CHB][hapmap]
rs10954206	0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11769769	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11982488	0.80[AMR][1000 genomes]
rs12154253	0.82[AFR][1000 genomes]
rs2956682	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4731481	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55817807	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55928948	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59287454	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60382581	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61437980	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62481896	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62481928	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62483270	0.87[AFR][1000 genomes]
rs62483311	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62483370	0.80[AMR][1000 genomes]
rs6467200	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6467202	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6467203	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6955870	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6979304	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs6979575	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs7795141	0.85[ASN][1000 genomes]
rs7800335	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9768325	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs6965333	TMEM209	cis	parietal	SCAN
rs6965333	RP11-274B21.4	cis	Skin Sun Exposed Lower leg	GTEx
rs6965333	RP11-274B21.3	cis	Muscle Skeletal	GTEx
rs6965333	RP11-274B21.4	cis	lung	GTEx
rs6965333	RP11-274B21.2	cis	Muscle Skeletal	GTEx
rs6965333	RP11-274B21.2	cis	Stomach	GTEx
rs6965333	RP11-274B21.2	cis	Adipose Subcutaneous	GTEx
rs6965333	RP11-274B21.2	cis	Nerve Tibial	GTEx
rs6965333	RP11-274B21.4	cis	Esophagus Mucosa	GTEx
rs6965333	RP11-274B21.3	cis	Nerve Tibial	GTEx
rs6965333	C7orf54	cis	cerebellum	SCAN
rs6965333	RP11-274B21.1	cis	Adipose Subcutaneous	GTEx
rs6965333	TSGA14	cis	cerebellum	SCAN
rs6965333	CICP14	cis	Skin Sun Exposed Lower leg	GTEx
rs6965333	RP11-274B21.1	cis	Nerve Tibial	GTEx
rs6965333	RP11-274B21.3	cis	Thyroid	GTEx
rs6965333	RP11-274B21.4	cis	Thyroid	GTEx
rs6965333	RP11-274B21.4	cis	Nerve Tibial	GTEx
rs6965333	RP11-274B21.2	cis	Thyroid	GTEx
rs6965333	RP11-274B21.4	cis	Stomach	GTEx
rs6965333	RP11-274B21.2	cis	Skin Sun Exposed Lower leg	GTEx
rs6965333	RP11-274B21.4	cis	Muscle Skeletal	GTEx
rs6965333	CICP14	cis	Thyroid	GTEx
rs6965333	RP11-274B21.1	cis	Skin Sun Exposed Lower leg	GTEx
rs6965333	RP11-274B21.2	cis	lung	GTEx
rs6965333	RP11-274B21.1	cis	lung	GTEx
rs6965333	RP11-274B21.4	cis	Adipose Subcutaneous	GTEx
rs6965333	CICP14	cis	Artery Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:128172600-128179400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:128172600-128179600	Weak transcription	Lung	lung
3	chr7:128172600-128184800	Weak transcription	Spleen	Spleen
4	chr7:128172600-128187600	Weak transcription	Pancreas	Pancrea
5	chr7:128172600-128189800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:128172600-128191000	Weak transcription	Ovary	ovary
7	chr7:128172600-128191200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:128172600-128193400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr7:128172600-128210800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:128172600-128214800	Weak transcription	Gastric	stomach
11	chr7:128172800-128239800	Weak transcription	Small Intestine	intestine
12	chr7:128173000-128188000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:128173000-128190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr7:128173000-128190800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr7:128173000-128231800	Weak transcription	Colonic Mucosa	Colon
16	chr7:128173000-128231800	Weak transcription	Fetal Kidney	kidney
17	chr7:128173200-128183200	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr7:128173400-128188200	Weak transcription	Fetal Brain Male	brain
19	chr7:128173600-128181200	Weak transcription	Fetal Intestine Large	intestine
20	chr7:128173600-128187200	Weak transcription	Brain Anterior Caudate	brain
21	chr7:128173600-128201000	Weak transcription	Psoas Muscle	Psoas
22	chr7:128173600-128214800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr7:128173800-128183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:128173800-128183200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:128173800-128183200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr7:128173800-128184800	Weak transcription	Fetal Lung	lung
27	chr7:128173800-128186600	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr7:128173800-128186800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr7:128173800-128186800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:128173800-128186800	Weak transcription	HMEC	breast
31	chr7:128173800-128186800	Weak transcription	NHDF-Ad	bronchial
32	chr7:128173800-128187000	Weak transcription	Primary B cells from cord blood	blood
33	chr7:128173800-128187400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr7:128173800-128190800	Weak transcription	Brain Substantia Nigra	brain
35	chr7:128173800-128191000	Weak transcription	Brain Angular Gyrus	brain
36	chr7:128173800-128197800	Weak transcription	Right Atrium	heart
37	chr7:128173800-128199800	Weak transcription	Right Ventricle	heart
38	chr7:128173800-128201000	Weak transcription	Brain Germinal Matrix	brain
39	chr7:128173800-128214800	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:128173800-128234400	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr7:128174000-128179400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr7:128174000-128180200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr7:128174000-128183200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr7:128174000-128185400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr7:128174000-128186800	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:128174000-128187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr7:128174000-128187000	Weak transcription	NHEK	skin
48	chr7:128174000-128210600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:128174000-128220600	Weak transcription	NHLF	lung
50	chr7:128174000-128231800	Weak transcription	Brain Cingulate Gyrus	brain

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