Variant report

Variant	rs6965433
Chromosome Location	chr7:26408323-26408324
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr7:26408260-26408410	HPAF	blood vessel:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
2	CTCF	chr7:26408320-26408470	HPF	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
3	RAD21	chr7:26408223-26408530	MCF-7	breast:	n/a	n/a
4	CTCF	chr7:26408280-26408430	HMEC	breast:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
5	CTCF	chr7:26408300-26408450	HRPEpiC	eye:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
6	CTCF	chr7:26408215-26408493	A549	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
7	CTCF	chr7:26408101-26408687	HCT-116	colon:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
8	RAD21	chr7:26408247-26408509	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr7:26408180-26408330	AG04450	lung:	n/a	n/a
10	CTCF	chr7:26408263-26408442	Medullo	brain:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
11	CTCF	chr7:26408280-26408430	HRE	kidney:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
12	CTCF	chr7:26408260-26408410	AG09319	gingival:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
13	CTCF	chr7:26408280-26408430	HMF	breast:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
14	RAD21	chr7:26408035-26408536	HCT-116	colon:	n/a	n/a
15	CTCF	chr7:26408127-26408520	IMR90	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
16	RAD21	chr7:26408241-26408458	MCF-7	breast:	n/a	n/a
17	CTCF	chr7:26408300-26408450	HPF	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
18	RAD21	chr7:26408148-26408607	A549	lung:	n/a	n/a
19	CTCF	chr7:26408260-26408410	BJ	skin:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
20	RAD21	chr7:26408057-26408622	HCT-116	colon:	n/a	n/a
21	CTCF	chr7:26408320-26408470	HBMEC	blood vessel:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
22	CTCF	chr7:26408240-26408390	HMEC	breast:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
23	RAD21	chr7:26408239-26408519	IMR90	lung:	n/a	n/a
24	RAD21	chr7:26408152-26408568	A549	lung:	n/a	n/a
25	CTCF	chr7:26408274-26408419	A549	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
26	CTCF	chr7:26408209-26408512	GM12878	blood:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
27	CTCF	chr7:26408220-26408370	AG04449	skin:	n/a	chr7:26408348-26408366
28	CTCF	chr7:26408260-26408410	MCF-7	breast:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
29	CTCF	chr7:26408280-26408430	Caco-2	colon:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
30	RAD21	chr7:26408169-26408564	Hela-S3	cervix:	n/a	n/a
31	CTCF	chr7:26408262-26408478	HUVEC	blood vessel:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
32	CTCF	chr7:26408260-26408410	HFF	foreskin:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
33	CTCF	chr7:26408260-26408410	AG10803	skin:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
34	CTCF	chr7:26408267-26408413	LNCaP	prostate:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
35	CTCF	chr7:26408294-26408436	Lung_OC	lung:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
36	CTCF	chr7:26408280-26408430	AG10803	skin:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
37	CTCF	chr7:26408260-26408410	HMF	breast:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
38	SMC3	chr7:26408192-26408597	Hela-S3	cervix:	n/a	n/a
39	RAD21	chr7:26408236-26408486	H1-hESC	embryonic stem cell:	n/a	n/a
40	CTCF	chr7:26408200-26408537	K562	blood:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
41	CTCF	chr7:26408260-26408410	HRE	kidney:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
42	RAD21	chr7:26408206-26408510	SK-N-SH_RA	brain:	n/a	n/a
43	CTCF	chr7:26408133-26408579	HCT-116	colon:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
44	CTCF	chr7:26408300-26408450	SK-N-SH_RA	brain:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
45	CTCF	chr7:26408287-26408416	K562	blood:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
46	RAD21	chr7:26408054-26410042	SK-N-SH	brain:	n/a	chr7:26409336-26409355 chr7:26409341-26409353
47	CTCF	chr7:26408300-26408450	HCPEpiC	choroid plexus:	n/a	chr7:26408348-26408366 chr7:26408350-26408371
48	RAD21	chr7:26408204-26408487	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr7:26408200-26408350	AG04450	lung:	n/a	n/a
50	CTCF	chr7:26408277-26408433	LNCaP	prostate:	n/a	chr7:26408348-26408366 chr7:26408350-26408371

No.	Distal block	Cell Line	Cell type
1	chr7:26407947..26408736-chr7:26721513..26722078,2	MCF-7	breast:
2	chr7:26407824..26409906-chr7:26706446..26707818,12	MCF-7	breast:
3	chr7:26329968..26332567-chr7:26407158..26410797,3	MCF-7	breast:
4	chr7:26407856..26408734-chr7:26707178..26708194,3	MCF-7	breast:

Variant related genes	Relation type
SNX10	TF binding region
ENSG00000086300	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59032944	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285286	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73285295	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021308	chr7:26116605-26419720	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	166 gene(s)	inside rSNPs	diseases
2	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26375000-26414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:26384800-26409400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr7:26385600-26414200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr7:26387400-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:26387800-26409400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr7:26388000-26409400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:26389000-26413200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr7:26397000-26409400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:26398600-26415400	Weak transcription	HMEC	breast
10	chr7:26402600-26415200	Enhancers	Liver	Liver
11	chr7:26403800-26415600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:26404800-26409400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr7:26404800-26409400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr7:26404800-26409600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr7:26404800-26411200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr7:26404800-26414000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:26404800-26415200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr7:26405000-26409000	Strong transcription	Primary monocytes fromperipheralblood	blood
19	chr7:26405000-26409400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr7:26405000-26409400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr7:26405200-26408600	Strong transcription	Primary neutrophils fromperipheralblood	blood
22	chr7:26405200-26409200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr7:26405200-26413800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:26405200-26414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:26405400-26409000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:26405400-26409000	Strong transcription	Primary B cells from peripheral blood	blood
27	chr7:26405400-26409400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr7:26405400-26413800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr7:26405400-26414600	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr7:26405800-26409200	Weak transcription	HUVEC	blood vessel
31	chr7:26405800-26414600	Weak transcription	K562	blood
32	chr7:26406000-26409400	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr7:26406200-26409400	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr7:26406200-26409400	Weak transcription	Fetal Intestine Large	intestine
35	chr7:26406400-26409400	Weak transcription	Fetal Lung	lung
36	chr7:26407000-26409000	Weak transcription	Dnd41	blood
37	chr7:26407000-26409400	Weak transcription	Adipose Nuclei	Adipose
38	chr7:26407000-26409400	Weak transcription	Brain Angular Gyrus	brain
39	chr7:26407000-26411200	Weak transcription	Fetal Intestine Small	intestine
40	chr7:26407200-26409400	Weak transcription	Primary T cells from cord blood	blood
41	chr7:26407400-26408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr7:26407400-26408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:26407400-26409400	Weak transcription	Thymus	Thymus
44	chr7:26407400-26411800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr7:26407400-26412000	Weak transcription	Placenta	Placenta
46	chr7:26407400-26415400	Weak transcription	HepG2	liver
47	chr7:26407400-26415600	Weak transcription	Spleen	Spleen
48	chr7:26407600-26408400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr7:26407600-26408800	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:26407600-26409200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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