Variant report

Variant	rs6966154
Chromosome Location	chr7:14217673-14217674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17167942	0.90[GIH][hapmap]
rs17167948	0.94[CEU][hapmap];0.92[EUR][1000 genomes]
rs2067023	0.83[EUR][1000 genomes]
rs2068399	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2068400	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2079458	0.83[EUR][1000 genomes]
rs2079459	0.81[GIH][hapmap];0.81[TSI][hapmap];0.83[EUR][1000 genomes]
rs2079460	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs2108204	0.85[EUR][1000 genomes]
rs2158828	0.81[EUR][1000 genomes]
rs34871470	0.83[EUR][1000 genomes]
rs35221866	0.84[EUR][1000 genomes]
rs35915890	0.82[EUR][1000 genomes]
rs6969690	0.80[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949467	chr7:13938464-14279074	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv949033	chr7:14086106-14860323	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1015312	chr7:14092753-14266917	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1021056	chr7:14162525-14269443	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv8052	chr7:14212806-14230704	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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