Variant report

Variant	rs6966209
Chromosome Location	chr7:80102599-80102600
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:80096594..80099585-chr7:80101660..80104577,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11973868	0.97[ASN][1000 genomes]
rs11983825	1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs17154004	0.97[ASN][1000 genomes]
rs17154059	0.87[ASN][1000 genomes]
rs6960247	0.97[ASN][1000 genomes]
rs73369009	1.00[AMR][1000 genomes]
rs73369016	1.00[AMR][1000 genomes]
rs73369025	0.93[ASN][1000 genomes]
rs73386759	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7796785	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888523	chr7:80088592-80142217	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv607680	chr7:80097576-80142217	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80095600-80106800	Weak transcription	Right Atrium	heart
2	chr7:80096800-80113000	Enhancers	Hela-S3	cervix
3	chr7:80099600-80109600	Weak transcription	NH-A	brain
4	chr7:80100800-80102600	Enhancers	Fetal Intestine Small	intestine
5	chr7:80100800-80103600	Enhancers	Fetal Intestine Large	intestine
6	chr7:80101200-80102600	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr7:80101400-80103400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:80101600-80102600	Enhancers	Small Intestine	intestine
9	chr7:80101800-80103200	Enhancers	Adipose Nuclei	Adipose
10	chr7:80101800-80107000	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr7:80101800-80107400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr7:80102000-80102600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:80102000-80102600	Active TSS	Duodenum Mucosa	Duodenum
14	chr7:80102000-80102600	Enhancers	HepG2	liver
15	chr7:80102000-80103000	Enhancers	Liver	Liver
16	chr7:80102200-80102600	Enhancers	Placenta	Placenta
17	chr7:80102200-80104200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr7:80102400-80102600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr7:80102400-80102600	Enhancers	Fetal Muscle Leg	muscle
20	chr7:80102400-80104000	Weak transcription	A549	lung
21	chr7:80102400-80107200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr7:80102400-80110000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr7:80102400-80110000	Weak transcription	Left Ventricle	heart

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