Variant report

Variant	rs6968527
Chromosome Location	chr7:78065082-78065083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12234242	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12234415	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12234591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12234628	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150727	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150731	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17150733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6944478	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370244	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73370252	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73701491	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78049600-78066200	Weak transcription	Ovary	ovary
2	chr7:78058800-78065800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:78060800-78068000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:78063600-78067200	Enhancers	Brain Hippocampus Middle	brain
5	chr7:78064200-78065200	Enhancers	Brain Anterior Caudate	brain
6	chr7:78064200-78065400	Enhancers	Brain Substantia Nigra	brain
7	chr7:78064200-78066400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr7:78064200-78067000	Enhancers	Brain Cingulate Gyrus	brain
9	chr7:78064200-78067000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr7:78064200-78067200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:78064400-78067600	Enhancers	HSMM	muscle
12	chr7:78064600-78066400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:78064800-78065600	Enhancers	HSMMtube	muscle
14	chr7:78064800-78067200	Enhancers	Aorta	Aorta
15	chr7:78064800-78067600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr7:78065000-78065400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr7:78065000-78065800	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:78065000-78066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr7:78065000-78066000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr7:78065000-78066000	Weak transcription	Psoas Muscle	Psoas
21	chr7:78065000-78066200	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:78065000-78067800	Weak transcription	Brain Angular Gyrus	brain

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