Variant report

Variant	rs6969468
Chromosome Location	chr7:145980918-145980919
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:40835299..40835996-chr7:145980649..145981149,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs41340948	1.00[ASW][hapmap];0.84[YRI][hapmap]
rs41484749	1.00[ASW][hapmap]
rs41520144	1.00[ASW][hapmap]
rs60526820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464743	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464744	1.00[ASW][hapmap];1.00[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464745	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464746	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6464747	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6944271	1.00[ASW][hapmap]
rs6946638	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6949894	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950099	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6950309	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6953102	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs6955461	1.00[ASW][hapmap]
rs6969634	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs6970046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6970389	0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6972500	1.00[AMR][1000 genomes]
rs73457987	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459911	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459919	0.89[AFR][1000 genomes]
rs73459922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459923	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73459938	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7781888	1.00[ASW][hapmap]
rs7783831	0.84[YRI][hapmap];1.00[AMR][1000 genomes]
rs7802166	0.84[YRI][hapmap]
rs7806448	0.98[AFR][1000 genomes]
rs7808182	0.91[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889384	chr7:145541783-146239545	Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1020950	chr7:145683419-146264304	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1030541	chr7:145883107-146022564	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv889387	chr7:145903862-146239545	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv533345	chr7:145934546-146134958	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv933622	chr7:145935381-145995971	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1015596	chr7:145942590-145992294	Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv5993	chr7:145970629-146015976	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:145963200-145987200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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