Variant report

Variant	rs6970169
Chromosome Location	chr7:15611153-15611154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10246891	0.84[ASN][1000 genomes]
rs11767229	0.83[EUR][1000 genomes]
rs12234842	0.87[ASN][1000 genomes]
rs12699734	0.84[EUR][1000 genomes]
rs2389534	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs35758812	0.89[EUR][1000 genomes]
rs6944184	0.83[EUR][1000 genomes]
rs7782511	0.85[ASN][1000 genomes]
rs7786262	0.83[ASN][1000 genomes]
rs7786817	0.86[ASN][1000 genomes]
rs7788313	0.84[EUR][1000 genomes]
rs7793650	0.84[EUR][1000 genomes]
rs7799810	0.89[EUR][1000 genomes]
rs9987013	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032866	chr7:15336831-15622515	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv606297	chr7:15582208-15621650	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv606298	chr7:15598156-15621650	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv606299	chr7:15603853-15637887	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv527015	chr7:15608035-15613225	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15610800-15611600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:15610800-15611800	Enhancers	HUVEC	blood vessel
3	chr7:15610800-15612000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr7:15611000-15611200	Weak transcription	Liver	Liver
5	chr7:15611000-15611800	Enhancers	Osteobl	bone
6	chr7:15611000-15612000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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