Variant report

Variant	rs6971960
Chromosome Location	chr7:124410208-124410209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs2190107	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61744942	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6969610	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6972234	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73443829	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73443830	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73443835	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73443846	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73719044	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7792880	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7807266	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	esv3446198	chr7:124358002-124586856	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124406200-124410800	Weak transcription	HUVEC	blood vessel
2	chr7:124406800-124410400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr7:124406800-124410600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr7:124406800-124410600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:124406800-124410600	Weak transcription	Brain Substantia Nigra	brain
6	chr7:124406800-124410800	Weak transcription	Brain Anterior Caudate	brain
7	chr7:124406800-124411000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr7:124406800-124412000	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:124410000-124411200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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