Variant report
| Variant | rs6972105 |
|---|---|
| Chromosome Location | chr7:117736213-117736214 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117735486..117737983-chr7:117823398..117825051,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000128534 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10247768 | 0.80[EUR][1000 genomes] |
| rs10272234 | 0.87[EUR][1000 genomes] |
| rs11542074 | 0.80[EUR][1000 genomes] |
| rs11974039 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs11983651 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12154684 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs2215628 | 0.80[EUR][1000 genomes] |
| rs2286863 | 0.80[EUR][1000 genomes] |
| rs2402300 | 0.96[AFR][1000 genomes];0.93[ASN][1000 genomes] |
| rs33924981 | 0.80[EUR][1000 genomes] |
| rs34010516 | 0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs34019303 | 0.80[EUR][1000 genomes] |
| rs35485182 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs38828 | 0.89[EUR][1000 genomes] |
| rs45604739 | 0.80[EUR][1000 genomes] |
| rs62466515 | 0.80[EUR][1000 genomes] |
| rs62468297 | 0.88[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs62469806 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6466643 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7786233 | 0.86[AMR][1000 genomes];0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869971 | chr7:117420583-118274149 | Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv1019337 | chr7:117707746-117739400 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1031419 | chr7:117708734-117739400 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117734600-117738600 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
