Variant report

Variant	rs6972731
Chromosome Location	chr7:7895322-7895323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10239371	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10244011	1.00[ASN][1000 genomes]
rs10262773	1.00[ASN][1000 genomes]
rs10270460	1.00[ASN][1000 genomes]
rs10270850	1.00[ASN][1000 genomes]
rs10278461	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10281564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12530790	1.00[ASN][1000 genomes]
rs12540059	1.00[ASN][1000 genomes]
rs17138583	1.00[ASN][1000 genomes]
rs4371915	1.00[ASN][1000 genomes]
rs4469370	1.00[ASN][1000 genomes]
rs61500839	1.00[ASN][1000 genomes]
rs6463730	1.00[ASN][1000 genomes]
rs6463731	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6463732	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs67470363	1.00[ASN][1000 genomes]
rs6953475	1.00[ASN][1000 genomes]
rs6965873	1.00[ASN][1000 genomes]
rs6972172	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6974910	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6976317	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7795244	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7804263	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026758	chr7:7187491-8075259	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1032670	chr7:7535515-8017077	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
3	nsv887478	chr7:7670718-7917360	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv887480	chr7:7681131-7917360	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv887485	chr7:7692483-7917360	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	esv2752177	chr7:7729247-8177689	Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv1026564	chr7:7734846-7897847	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv887489	chr7:7770203-7913311	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv1027770	chr7:7797431-7957507	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv538722	chr7:7797431-7957507	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv887490	chr7:7801684-7908970	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
12	nsv523479	chr7:7821594-7909899	ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
13	nsv917172	chr7:7854632-8807385	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
14	nsv1030180	chr7:7860424-8059221	Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1027123	chr7:7870047-7926288	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:7870000-7900400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr7:7892200-7906800	Weak transcription	Fetal Heart	heart
3	chr7:7893800-7896000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:7894000-7895400	ZNF genes & repeats	Thymus	Thymus
5	chr7:7894000-7900600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:7894200-7895400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr7:7894200-7895600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr7:7894200-7895600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr7:7894400-7895400	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:7894400-7895800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
11	chr7:7894600-7895400	ZNF genes & repeats	Fetal Intestine Small	intestine
12	chr7:7894600-7896000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
13	chr7:7894800-7895600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr7:7894800-7896000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr7:7895000-7895400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:7895000-7895800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
17	chr7:7895000-7895800	ZNF genes & repeats	Primary B cells from cord blood	blood
18	chr7:7895000-7896000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
19	chr7:7895200-7895400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
20	chr7:7895200-7895400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:7895200-7895400	ZNF genes & repeats	Left Ventricle	heart
22	chr7:7895200-7898800	Weak transcription	Hela-S3	cervix
23	chr7:7895200-7900800	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links