Variant report

Variant	rs6973104
Chromosome Location	chr7:5780196-5780197
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:5779441..5783030-chr7:5818852..5821920,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000011275	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11971922	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11980556	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs6948331	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6964645	0.90[AFR][1000 genomes]
rs6965723	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6968987	1.00[YRI][hapmap]
rs6974774	1.00[YRI][hapmap]
rs6976510	0.94[AFR][1000 genomes]
rs71531328	1.00[AMR][1000 genomes]
rs7783367	0.90[AFR][1000 genomes]
rs852378	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869165	chr7:4889618-5799719	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	352 gene(s)	inside rSNPs	diseases
2	nsv530979	chr7:5101631-5864814	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
3	nsv530981	chr7:5157150-5920006	Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	348 gene(s)	inside rSNPs	diseases
4	nsv530983	chr7:5370746-6070852	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	368 gene(s)	inside rSNPs	diseases
5	nsv916391	chr7:5417945-5889565	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	336 gene(s)	inside rSNPs	diseases
6	nsv533108	chr7:5488018-6316581	Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	390 gene(s)	inside rSNPs	diseases
7	nsv1033556	chr7:5565080-6186815	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
8	nsv538710	chr7:5565080-6186815	Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	357 gene(s)	inside rSNPs	diseases
9	nsv530467	chr7:5617816-5815082	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
10	nsv1017612	chr7:5629728-5819144	Genic enhancers Weak transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
11	nsv1021989	chr7:5629728-6186815	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	126 gene(s)	inside rSNPs	diseases
12	nsv887419	chr7:5703669-5820383	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
13	nsv830891	chr7:5726301-5895460	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
14	nsv1028601	chr7:5748982-5919098	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1034215	chr7:5748982-6056619	Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
16	nsv1016690	chr7:5749222-6056619	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
17	nsv1027679	chr7:5760731-6056619	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
18	nsv464293	chr7:5778796-5891221	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
19	nsv464294	chr7:5778796-5891221	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
20	nsv605987	chr7:5778796-5891221	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:5753200-5794400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:5755000-5780800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:5761600-5785600	Weak transcription	Fetal Brain Male	brain
4	chr7:5761800-5783000	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:5762000-5820400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr7:5762800-5786000	Weak transcription	Fetal Kidney	kidney
7	chr7:5762800-5790200	Weak transcription	Small Intestine	intestine
8	chr7:5765200-5780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:5765200-5790400	Weak transcription	Psoas Muscle	Psoas
10	chr7:5767400-5780200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr7:5768800-5780600	Weak transcription	Esophagus	oesophagus
12	chr7:5768800-5798200	Weak transcription	Colonic Mucosa	Colon
13	chr7:5769000-5783800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr7:5769000-5785600	Weak transcription	Brain Angular Gyrus	brain
15	chr7:5769200-5780200	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:5769200-5780200	Weak transcription	Right Ventricle	heart
17	chr7:5769200-5780600	Weak transcription	Gastric	stomach
18	chr7:5769200-5785000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:5769200-5790200	Weak transcription	Pancreas	Pancrea
20	chr7:5769600-5783400	Weak transcription	Fetal Lung	lung
21	chr7:5770000-5780400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:5774200-5783800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:5774200-5800600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr7:5775400-5782600	Strong transcription	Fetal Intestine Small	intestine
25	chr7:5775800-5782800	Strong transcription	Fetal Stomach	stomach
26	chr7:5776200-5781200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr7:5776200-5781400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr7:5776400-5780600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:5776600-5781000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr7:5776600-5781400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:5776600-5781400	Strong transcription	Primary neutrophils fromperipheralblood	blood
32	chr7:5776600-5781400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr7:5776600-5781600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr7:5776600-5781600	Strong transcription	Fetal Intestine Large	intestine
35	chr7:5776600-5783200	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr7:5776800-5781200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:5776800-5781400	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr7:5776800-5781400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:5776800-5781400	Strong transcription	Fetal Muscle Leg	muscle
40	chr7:5776800-5781400	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr7:5776800-5781600	Strong transcription	Primary monocytes fromperipheralblood	blood
42	chr7:5776800-5782000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr7:5776800-5783400	Strong transcription	Fetal Muscle Trunk	muscle
44	chr7:5776800-5786600	Strong transcription	Fetal Thymus	thymus
45	chr7:5777000-5780600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr7:5777000-5781200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr7:5777000-5781400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:5777000-5781600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr7:5777000-5781600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr7:5777200-5781200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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