Variant report

Variant	rs6973472
Chromosome Location	chr7:106821925-106821926
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:106806204..106812770-chr7:106813358..106822449,17	MCF-7	breast:

Variant related genes	Relation type
ENSG00000105856	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2395839	0.85[ASN][1000 genomes]
rs7783805	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3383027	chr7:106802625-107096474	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106810600-106836800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:106810800-106826800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr7:106810800-106828200	Weak transcription	Esophagus	oesophagus
4	chr7:106810800-106836200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:106811000-106824200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr7:106811000-106826800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:106811000-106826800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:106811000-106828800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:106811400-106824800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr7:106811400-106825200	Weak transcription	Lung	lung
11	chr7:106811400-106825800	Weak transcription	NHLF	lung
12	chr7:106812200-106825200	Weak transcription	Aorta	Aorta
13	chr7:106812400-106822600	Weak transcription	Fetal Brain Male	brain
14	chr7:106812400-106826200	Weak transcription	Spleen	Spleen
15	chr7:106814000-106822600	Weak transcription	Fetal Brain Female	brain
16	chr7:106814800-106822400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:106815000-106822600	Weak transcription	Brain Germinal Matrix	brain
18	chr7:106815200-106828200	Weak transcription	Pancreas	Pancrea
19	chr7:106815200-106849400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:106815400-106822800	Weak transcription	GM12878-XiMat	blood
21	chr7:106815800-106827800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:106816000-106822200	Weak transcription	Fetal Kidney	kidney
23	chr7:106816000-106822400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr7:106816000-106843600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:106816800-106823600	Weak transcription	Left Ventricle	heart
26	chr7:106817400-106851400	Strong transcription	Primary B cells from peripheral blood	blood
27	chr7:106819600-106851800	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr7:106819800-106822000	Enhancers	Fetal Intestine Large	intestine
29	chr7:106819800-106822000	Genic enhancers	Fetal Intestine Small	intestine
30	chr7:106819800-106846600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr7:106819800-106851600	Strong transcription	Dnd41	blood
32	chr7:106820000-106823000	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr7:106820000-106824800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr7:106820000-106851200	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr7:106820000-106851600	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr7:106820200-106823200	Strong transcription	H1 Cell Line	embryonic stem cell
37	chr7:106820200-106825000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr7:106820200-106828600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr7:106820200-106828800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr7:106820200-106833600	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr7:106820200-106834600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:106820200-106837000	Weak transcription	Psoas Muscle	Psoas
43	chr7:106820200-106848400	Strong transcription	Placenta	Placenta
44	chr7:106820200-106851200	Strong transcription	Primary B cells from cord blood	blood
45	chr7:106820200-106851800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:106820200-106851800	Strong transcription	Fetal Thymus	thymus
47	chr7:106820400-106834000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:106820400-106834000	Strong transcription	Primary hematopoietic stem cells	blood
49	chr7:106820400-106845200	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr7:106820400-106848200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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