Variant report

Variant	rs6973745
Chromosome Location	chr7:39763443-39763444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13228455	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17171612	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1859480	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35569526	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4587238	0.87[ASN][1000 genomes]
rs4723900	0.82[EUR][1000 genomes]
rs57164715	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61070404	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462942	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6967563	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969272	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776621	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805581	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508451	chr7:39660784-39787222	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39761200-39764400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:39762200-39766400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:39762600-39766000	Weak transcription	K562	blood
4	chr7:39763000-39772400	Weak transcription	Right Atrium	heart
5	chr7:39763200-39764400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:39763200-39766200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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