Variant report

Variant	rs6973818
Chromosome Location	chr7:106675639-106675640
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12532970	0.90[ASN][1000 genomes]
rs12533000	0.90[ASN][1000 genomes]
rs17424422	0.93[ASN][1000 genomes]
rs2707375	0.97[ASN][1000 genomes]
rs7787111	0.92[AFR][1000 genomes]
rs7806572	0.97[AFR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831087	chr7:106673465-106872460	Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:106670200-106676800	Weak transcription	Fetal Brain Male	brain
2	chr7:106673400-106676400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:106673600-106675800	Enhancers	K562	blood
4	chr7:106674400-106675800	Weak transcription	Fetal Heart	heart
5	chr7:106674400-106675800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr7:106674600-106675800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr7:106675600-106675800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:106675600-106675800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:106675600-106676000	Enhancers	Osteobl	bone
10	chr7:106675600-106676200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr7:106675600-106676400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr7:106675600-106676800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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