Variant report

Variant	rs6974549
Chromosome Location	chr7:123848441-123848442
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10215045	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10215628	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10216192	0.90[CEU][hapmap];0.87[EUR][1000 genomes]
rs10238721	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10241473	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10250818	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10254273	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10267596	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954004	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10954005	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12154786	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12666032	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12669348	0.87[EUR][1000 genomes]
rs2191460	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2191463	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2215424	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2215425	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4727992	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731156	0.81[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4731157	0.84[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62474399	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963172	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7778216	0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7801530	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805323	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608338	chr7:123787673-124063498	Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1019824	chr7:123817167-123926854	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1016498	chr7:123829760-123954337	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv539109	chr7:123829760-123954337	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1818748	chr7:123829886-124039708	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:123847800-123849200	Enhancers	Fetal Brain Male	brain
2	chr7:123848400-123849000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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