Variant report

Variant	rs6974612
Chromosome Location	chr7:140346148-140346149
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:140337889..140338449-chr7:140346126..140347040,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1639968	1.00[AMR][1000 genomes]
rs1681774	1.00[AMR][1000 genomes]
rs269229	1.00[AMR][1000 genomes]
rs269231	1.00[AMR][1000 genomes]
rs269265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140341400-140346600	Weak transcription	A549	lung
2	chr7:140341600-140346400	Weak transcription	Brain Germinal Matrix	brain
3	chr7:140341600-140346800	Weak transcription	Brain Anterior Caudate	brain
4	chr7:140341600-140346800	Weak transcription	Right Ventricle	heart
5	chr7:140341600-140353000	Weak transcription	Ovary	ovary
6	chr7:140341800-140346600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr7:140341800-140346600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr7:140341800-140346800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:140341800-140346800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr7:140341800-140347000	Weak transcription	Brain Angular Gyrus	brain
11	chr7:140341800-140347000	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:140341800-140349600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr7:140341800-140350200	Weak transcription	Left Ventricle	heart
14	chr7:140341800-140355800	Weak transcription	Right Atrium	heart
15	chr7:140342000-140346400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:140342000-140346600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr7:140342000-140346600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr7:140342000-140346600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:140342000-140346800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr7:140342000-140346800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr7:140342000-140347000	Weak transcription	NHLF	lung
22	chr7:140342000-140347200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr7:140342000-140347200	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr7:140342200-140346400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr7:140342200-140347200	Weak transcription	Fetal Lung	lung
26	chr7:140342600-140346400	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:140342600-140346800	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:140342600-140346800	Weak transcription	Fetal Stomach	stomach
29	chr7:140343600-140346600	Weak transcription	Fetal Muscle Trunk	muscle
30	chr7:140344600-140349200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr7:140345400-140346600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:140345800-140346400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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