Variant report

Variant	rs6975750
Chromosome Location	chr7:96655014-96655015
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr7:96655000-96657260	H1-hESC	embryonic stem cell:	n/a	n/a
2	REST	chr7:96624507-96656402	H1-neurons	neurons:	n/a	chr7:96626900-96626913 chr7:96628274-96628287 chr7:96653242-96653252 chr7:96638441-96638449 chr7:96644780-96644790 chr7:96627625-96627635 chr7:96628223-96628236 chr7:96655951-96655958 chr7:96625513-96625526 chr7:96635204-96635222 chr7:96634677-96634690 chr7:96628302-96628315 chr7:96652071-96652084 chr7:96650634-96650647 chr7:96628298-96628318 chr7:96628298-96628318

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:95543308..95544949-chr7:96654875..96656626,2	MCF-7	breast:

Variant related genes	Relation type
DLX5	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7789931	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv824221	chr7:96620279-96669211	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv970552	chr7:96654892-96655988	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:96647000-96655200	Bivalent/Poised TSS	Brain Germinal Matrix	brain
2	chr7:96653200-96656600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr7:96654000-96657200	Bivalent Enhancer	Fetal Brain Male	brain
4	chr7:96654200-96655400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:96654200-96655400	Bivalent Enhancer	Brain Hippocampus Middle	brain
6	chr7:96654200-96655600	Weak transcription	Gastric	stomach
7	chr7:96654200-96655600	Weak transcription	Pancreas	Pancrea
8	chr7:96654200-96656800	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:96654400-96655600	Weak transcription	Right Ventricle	heart
10	chr7:96654400-96657200	Bivalent/Poised TSS	Fetal Brain Female	brain
11	chr7:96654600-96655200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
12	chr7:96654600-96655200	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
13	chr7:96654600-96655200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
14	chr7:96654600-96655200	Bivalent Enhancer	Fetal Lung	lung
15	chr7:96654600-96655400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr7:96654600-96655400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
17	chr7:96654600-96655400	Weak transcription	Right Atrium	heart
18	chr7:96654600-96655600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr7:96654600-96655600	Enhancers	Ovary	ovary
20	chr7:96654600-96657000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr7:96654800-96655400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
22	chr7:96654800-96655400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr7:96654800-96655600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
24	chr7:96654800-96656400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr7:96654800-96656600	Weak transcription	Osteobl	bone
26	chr7:96655000-96655600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
27	chr7:96655000-96655800	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood

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