Variant report

Variant	rs6975884
Chromosome Location	chr7:98733511-98733512
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98730089..98736251-chr7:98737057..98742639,7	MCF-7	breast:
2	chr7:98727310..98730186-chr7:98733337..98736321,3	MCF-7	breast:
3	chr7:98721212..98723989-chr7:98732516..98736189,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10953279	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13238430	1.00[EUR][1000 genomes]
rs8180701	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
2	chr7:98710000-98739200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:98714800-98739400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:98718200-98736400	Weak transcription	Dnd41	blood
5	chr7:98718800-98734800	Weak transcription	Fetal Brain Female	brain
6	chr7:98721800-98735000	Weak transcription	HSMMtube	muscle
7	chr7:98721800-98735400	Enhancers	Stomach Mucosa	stomach
8	chr7:98722000-98739600	Weak transcription	Primary B cells from cord blood	blood
9	chr7:98722200-98738600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:98722400-98739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr7:98722600-98734800	Weak transcription	Fetal Heart	heart
12	chr7:98723400-98735800	Weak transcription	Hela-S3	cervix
13	chr7:98723600-98735000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr7:98723600-98738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr7:98723800-98738600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr7:98725000-98734800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr7:98725000-98735000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr7:98725000-98739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:98726600-98734800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr7:98726800-98734400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr7:98727600-98733600	Weak transcription	NHDF-Ad	bronchial
22	chr7:98728800-98734400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr7:98729600-98734800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr7:98729800-98734800	Enhancers	NHLF	lung
25	chr7:98730000-98734600	Weak transcription	Brain Germinal Matrix	brain
26	chr7:98730000-98735000	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr7:98730200-98734000	Enhancers	Liver	Liver
28	chr7:98730200-98734400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr7:98730200-98734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr7:98730200-98734800	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr7:98730400-98734400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr7:98730600-98733600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr7:98730600-98733600	Weak transcription	Right Atrium	heart
34	chr7:98730600-98734800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr7:98730600-98735000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:98730800-98733600	Weak transcription	Lung	lung
37	chr7:98730800-98734000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:98730800-98734200	Weak transcription	Esophagus	oesophagus
39	chr7:98730800-98734200	Weak transcription	Pancreas	Pancrea
40	chr7:98730800-98734200	Weak transcription	Stomach Smooth Muscle	stomach
41	chr7:98730800-98734400	Weak transcription	Primary T cells fromperipheralblood	blood
42	chr7:98730800-98735000	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:98730800-98735000	Weak transcription	Brain Substantia Nigra	brain
44	chr7:98730800-98735000	Weak transcription	Placenta	Placenta
45	chr7:98730800-98735000	Weak transcription	Spleen	Spleen
46	chr7:98730800-98735000	Weak transcription	HUVEC	blood vessel
47	chr7:98730800-98738000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr7:98730800-98739400	Weak transcription	Right Ventricle	heart
49	chr7:98730800-98739600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr7:98731000-98733600	Weak transcription	Gastric	stomach

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