Variant report

Variant	rs6976823
Chromosome Location	chr7:39568352-39568353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10085508	1.00[ASN][1000 genomes]
rs17171588	1.00[ASN][1000 genomes]
rs17171597	1.00[ASN][1000 genomes]
rs17416701	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28562987	1.00[ASN][1000 genomes]
rs28657873	1.00[ASN][1000 genomes]
rs57409821	1.00[ASN][1000 genomes]
rs57897009	1.00[ASN][1000 genomes]
rs60144935	1.00[ASN][1000 genomes]
rs61355784	1.00[ASN][1000 genomes]
rs6462925	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6950256	1.00[ASN][1000 genomes]
rs6964238	1.00[ASN][1000 genomes]
rs6969739	1.00[ASN][1000 genomes]
rs6970050	1.00[ASN][1000 genomes]
rs73372748	1.00[ASN][1000 genomes]
rs73372750	1.00[ASN][1000 genomes]
rs73375698	1.00[ASN][1000 genomes]
rs7777969	1.00[ASN][1000 genomes]
rs7786929	1.00[ASN][1000 genomes]
rs7798403	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021180	chr7:39424988-39642261	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1026951	chr7:39429036-39642261	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv966782	chr7:39454992-39581886	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1018430	chr7:39455497-39643569	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39567200-39569600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr7:39567200-39573200	Weak transcription	Small Intestine	intestine
3	chr7:39567400-39568400	Weak transcription	Fetal Intestine Small	intestine
4	chr7:39568200-39571000	Enhancers	Dnd41	blood
5	chr7:39568200-39576400	Enhancers	Fetal Intestine Large	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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