Variant report

Variant	rs6977099
Chromosome Location	chr7:83762428-83762429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10259508	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10261415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10263314	0.90[EUR][1000 genomes]
rs10279093	0.84[EUR][1000 genomes]
rs10808306	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12707615	0.84[EUR][1000 genomes]
rs12707616	0.84[EUR][1000 genomes]
rs12707617	0.86[EUR][1000 genomes]
rs12707619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1468344	0.84[EUR][1000 genomes]
rs1468345	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1468346	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2040872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2067693	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2158566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372033	0.84[EUR][1000 genomes]
rs2527037	0.82[EUR][1000 genomes]
rs2691698	0.82[EUR][1000 genomes]
rs2691700	0.82[EUR][1000 genomes]
rs3801655	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141151	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs447	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4732543	0.84[EUR][1000 genomes]
rs4732545	0.84[EUR][1000 genomes]
rs6467987	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6467988	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6651129	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6964546	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6974494	0.84[EUR][1000 genomes]
rs6977306	0.83[EUR][1000 genomes]
rs6978184	0.90[EUR][1000 genomes]
rs7781923	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7783472	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7785708	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7793598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804563	0.85[EUR][1000 genomes]
rs7808864	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs929334	0.84[EUR][1000 genomes]
rs929335	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529344	chr7:83714286-84592857	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv888629	chr7:83722691-83896025	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1017884	chr7:83724138-83972995	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv538995	chr7:83724138-83972995	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83734400-83762800	Weak transcription	Fetal Muscle Leg	muscle
2	chr7:83745000-83769400	Weak transcription	Fetal Stomach	stomach
3	chr7:83752600-83769600	Weak transcription	A549	lung
4	chr7:83753800-83763400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr7:83753800-83763400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr7:83753800-83763400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:83753800-83766800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:83753800-83766800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr7:83753800-83768000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:83753800-83768200	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr7:83753800-83769600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:83753800-83770800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr7:83754000-83763400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:83754000-83767400	Weak transcription	NHLF	lung
15	chr7:83754000-83767800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:83754000-83772200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr7:83754000-83774200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr7:83754800-83763400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:83755000-83763400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:83755000-83768800	Weak transcription	Colon Smooth Muscle	Colon
21	chr7:83756800-83763000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:83756800-83764000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr7:83758600-83765400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr7:83760000-83763400	Weak transcription	NHDF-Ad	bronchial
25	chr7:83761000-83768600	Weak transcription	Fetal Lung	lung
26	chr7:83761000-83775200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr7:83761400-83763400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:83762200-83764400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:83762400-83764400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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