Variant report

Variant	rs6977920
Chromosome Location	chr7:149329320-149329321
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:149328338..149331555-chr7:149332528..149335075,3	MCF-7	breast:
2	chr7:149321043..149325169-chr7:149327857..149333014,6	MCF-7	breast:
3	chr7:149320641..149326714-chr7:149327031..149331869,11	K562	blood:

Variant related genes	Relation type
ENSG00000133624	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10081386	1.00[AMR][1000 genomes]
rs10215065	1.00[MEX][hapmap]
rs10216106	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10234186	1.00[ASW][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10235231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10236963	1.00[AMR][1000 genomes]
rs10238762	1.00[AMR][1000 genomes]
rs10247081	0.82[AFR][1000 genomes]
rs10248663	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10252201	0.83[AMR][1000 genomes]
rs10261861	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs10265848	1.00[AMR][1000 genomes]
rs10272158	0.83[AMR][1000 genomes]
rs10281165	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28375806	1.00[AMR][1000 genomes]
rs28396902	1.00[AMR][1000 genomes]
rs28456067	0.83[AMR][1000 genomes]
rs28465683	0.83[AMR][1000 genomes]
rs28586594	1.00[AMR][1000 genomes]
rs28660555	0.83[AMR][1000 genomes]
rs2888589	1.00[AMR][1000 genomes]
rs55953655	0.83[AMR][1000 genomes]
rs57933524	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6943383	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965066	1.00[MEX][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs73469493	0.83[AMR][1000 genomes]
rs73471483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73475606	1.00[AMR][1000 genomes]
rs7777819	1.00[MEX][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7780303	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7786938	1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7792838	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7793341	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7808284	0.93[YRI][hapmap];1.00[AMR][1000 genomes]
rs7808416	0.93[YRI][hapmap];0.83[AMR][1000 genomes]
rs9986834	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021849	chr7:149230929-149422239	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1034350	chr7:149264094-149666356	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv539190	chr7:149264094-149666356	Flanking Active TSS Genic enhancers Weak transcription Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3328261	chr7:149310195-149344332	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
5	esv3376440	chr7:149310933-149344805	Active TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:149322400-149340000	Weak transcription	Right Atrium	heart

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