Variant report

Variant	rs6978536
Chromosome Location	chr7:140793461-140793462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10233636	1.00[AMR][1000 genomes]
rs10237579	1.00[AMR][1000 genomes]
rs498015	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs573472	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6464117	1.00[AMR][1000 genomes]
rs6962987	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889248	chr7:140754785-140809205	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3336433	chr7:140783089-140892541	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140778800-140794400	Weak transcription	Fetal Brain Female	brain
2	chr7:140783400-140794400	Weak transcription	Brain Angular Gyrus	brain
3	chr7:140783400-140800600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr7:140783400-140801400	Weak transcription	Fetal Brain Male	brain
5	chr7:140792600-140793600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:140792600-140794200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:140793000-140793800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr7:140793000-140794600	Enhancers	H9 Cell Line	embryonic stem cell
9	chr7:140793000-140796000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr7:140793200-140794400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:140793200-140795200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr7:140793200-140795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr7:140793200-140795800	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr7:140793200-140796200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr7:140793400-140794600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr7:140793400-140795000	Enhancers	Brain Anterior Caudate	brain
17	chr7:140793400-140796000	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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