Variant report

Variant	rs6978858
Chromosome Location	chr7:139922860-139922861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139919455..139925009-chr7:139928438..139931920,5	K562	blood:
2	chr7:139901740..139905135-chr7:139920305..139924136,3	K562	blood:
3	chr7:139876210..139878623-chr7:139921184..139924716,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000006459	Chromatin interaction
ENSG00000260231	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2471305	1.00[YRI][hapmap]
rs6963442	1.00[YRI][hapmap]
rs7804358	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889247	chr7:139855216-140033631	Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1015840	chr7:139912355-139987681	Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:139905400-139924000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:139910000-139929400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:139920200-139923400	Weak transcription	Stomach Mucosa	stomach
4	chr7:139921200-139923200	Enhancers	HepG2	liver
5	chr7:139921200-139929400	Enhancers	Primary B cells from peripheral blood	blood
6	chr7:139921600-139926600	Enhancers	Primary B cells from cord blood	blood
7	chr7:139922200-139929400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr7:139922400-139923400	Enhancers	Primary T cells from cord blood	blood
9	chr7:139922400-139923600	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr7:139922400-139924200	Enhancers	Fetal Thymus	thymus
11	chr7:139922400-139924400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:139922400-139926600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr7:139922400-139926600	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr7:139922400-139927000	Enhancers	Primary T cells fromperipheralblood	blood
15	chr7:139922400-139927200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr7:139922600-139923000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:139922600-139923000	Enhancers	Placenta	Placenta
18	chr7:139922600-139923200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
19	chr7:139922600-139923200	Enhancers	K562	blood
20	chr7:139922600-139923200	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr7:139922600-139923600	Flanking Active TSS	GM12878-XiMat	blood
22	chr7:139922600-139924200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr7:139922600-139926000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:139922600-139926400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr7:139922600-139927000	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr7:139922600-139929200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:139922800-139923400	Weak transcription	Primary hematopoietic stem cells	blood
28	chr7:139922800-139923400	Enhancers	Rectal Mucosa Donor 29	rectum
29	chr7:139922800-139923400	Enhancers	Spleen	Spleen
30	chr7:139922800-139924400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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