Variant report
| Variant | rs6979768 |
|---|---|
| Chromosome Location | chr7:98748442-98748443 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:98745845..98748521-chr7:98754573..98756801,2 | K562 | blood: | |
| 2 | chr7:98742101..98744840-chr7:98747144..98750541,3 | K562 | blood: | |
| 3 | chr7:98746993..98748569-chr7:98768043..98771030,2 | MCF-7 | breast: | |
| 4 | chr7:98741100..98743568-chr7:98748333..98750378,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198742 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10231389 | 1.00[MEX][hapmap] |
| rs10261038 | 1.00[AMR][1000 genomes] |
| rs10280276 | 1.00[MEX][hapmap] |
| rs2138087 | 1.00[MEX][hapmap] |
| rs219801 | 1.00[MEX][hapmap] |
| rs28377591 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28482205 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28631921 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58227667 | 1.00[AMR][1000 genomes] |
| rs6969549 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7794656 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9690339 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9690967 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9691980 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9692139 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024529 | chr7:98194830-98793518 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv539036 | chr7:98194830-98793518 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 3 | esv2755119 | chr7:98721885-98800145 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| 4 | esv1792421 | chr7:98737119-98752081 | Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs6979768 | TRIM43B | trans | lymphoblastoid | seeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:98748400-98748600 | Enhancers | K562 | blood |
| 2 | chr7:98748400-98748800 | Enhancers | A549 | lung |
