Variant report

Variant	rs6980086
Chromosome Location	chr7:78300919-78300920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10226116	1.00[EUR][1000 genomes]
rs10229518	1.00[EUR][1000 genomes]
rs10244492	1.00[EUR][1000 genomes]
rs10267590	1.00[EUR][1000 genomes]
rs13437895	1.00[EUR][1000 genomes]
rs16886268	1.00[EUR][1000 genomes]
rs6948028	1.00[EUR][1000 genomes]
rs7796399	1.00[EUR][1000 genomes]
rs7797738	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7803524	1.00[EUR][1000 genomes]
rs9656182	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022764	chr7:77911072-78316607	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1022199	chr7:78054639-78469370	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538986	chr7:78054639-78469370	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv464597	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv607656	chr7:78269375-78301419	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:78300600-78301400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr7:78300800-78301000	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr7:78300800-78301400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr7:78300800-78301600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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