Variant report

Variant	rs6980130
Chromosome Location	chr7:146398025-146398026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:146392626..146394325-chr7:146397698..146400118,2	K562	blood:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10265785	0.83[GIH][hapmap]
rs10487922	1.00[CHB][hapmap]
rs12113836	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs1494445	0.86[CHB][hapmap]
rs1494451	0.86[CHB][hapmap]
rs1587045	0.86[CHB][hapmap]
rs17170221	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs17170227	1.00[CHB][hapmap]
rs173168	0.86[CHB][hapmap]
rs189364	1.00[CHB][hapmap]
rs2131930	0.86[CHB][hapmap]
rs2533090	1.00[CHB][hapmap]
rs2533095	0.91[ASN][1000 genomes]
rs2533096	0.81[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs2533101	0.86[CHB][hapmap]
rs344448	1.00[CHB][hapmap]
rs344451	1.00[CHB][hapmap]
rs344454	1.00[CHB][hapmap]
rs344461	1.00[CHB][hapmap]
rs344465	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs344470	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs344473	0.91[ASN][1000 genomes]
rs344478	1.00[CHB][hapmap]
rs34636358	0.81[ASN][1000 genomes]
rs41501455	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[ASN][1000 genomes]
rs4255055	0.92[ASN][1000 genomes]
rs67507935	0.92[ASN][1000 genomes]
rs6945320	1.00[CHB][hapmap]
rs6946015	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6951437	1.00[GIH][hapmap]
rs6953104	0.83[GIH][hapmap]
rs6955295	1.00[CHB][hapmap];0.90[CHD][hapmap];0.81[ASN][1000 genomes]
rs6959062	0.86[CHB][hapmap]
rs6969645	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs6969806	0.81[ASN][1000 genomes]
rs6976154	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6977310	0.83[GIH][hapmap]
rs73168707	0.92[ASN][1000 genomes]
rs73168714	0.92[ASN][1000 genomes]
rs73168715	0.92[ASN][1000 genomes]
rs73168719	0.90[ASN][1000 genomes]
rs73168722	0.88[ASN][1000 genomes]
rs73168724	0.88[ASN][1000 genomes]
rs73168725	0.81[ASN][1000 genomes]
rs73168726	0.81[ASN][1000 genomes]
rs73168727	0.81[ASN][1000 genomes]
rs73168730	0.81[ASN][1000 genomes]
rs73168731	0.81[ASN][1000 genomes]
rs735162	0.86[CHB][hapmap]
rs7811006	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021967	chr7:146199590-146413808	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1015996	chr7:146202073-146419347	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv934014	chr7:146212698-146400508	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1022547	chr7:146226298-146624409	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv996300	chr7:146236230-146663300	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
6	nsv1018605	chr7:146287876-146448400	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv889392	chr7:146292088-146446767	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1027561	chr7:146308783-146762872	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
9	nsv608939	chr7:146332953-146464965	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1021923	chr7:146344105-146442062	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1021542	chr7:146344105-146564397	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv817275	chr7:146346102-146475758	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2761379	chr7:146347722-146448412	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv531439	chr7:146349600-146467532	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv889393	chr7:146353619-146428215	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv889394	chr7:146364177-146464965	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv608940	chr7:146367793-146660924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
18	nsv932964	chr7:146380022-146451013	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv1024692	chr7:146382761-146415878	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
20	nsv1031695	chr7:146383427-146503119	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv470397	chr7:146389259-146420571	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:146397200-146398600	Enhancers	Ovary	ovary
2	chr7:146397800-146398400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr7:146398000-146399800	Enhancers	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links