Variant report

Variant	rs6980325
Chromosome Location	chr7:11603287-11603288
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10242744	0.88[JPT][hapmap]
rs10250564	0.88[JPT][hapmap]
rs10486153	0.83[CHB][hapmap]
rs12112423	0.82[CEU][hapmap]
rs12112567	0.82[CEU][hapmap]
rs12699208	0.83[CEU][hapmap]
rs12699211	0.88[JPT][hapmap]
rs12699236	0.82[ASN][1000 genomes]
rs12699241	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12699242	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs12699243	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs12699244	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs12699245	0.84[CHB][hapmap]
rs13229007	0.83[ASN][1000 genomes]
rs13229378	0.83[ASN][1000 genomes]
rs13229567	0.83[ASN][1000 genomes]
rs13246013	0.91[ASN][1000 genomes]
rs16	0.81[YRI][hapmap]
rs17164823	0.84[CHB][hapmap];0.86[ASN][1000 genomes]
rs2072139	0.82[CEU][hapmap];0.80[JPT][hapmap]
rs2074605	0.83[CEU][hapmap]
rs2883564	0.83[CEU][hapmap]
rs35025590	0.90[AMR][1000 genomes]
rs425	0.92[YRI][hapmap]
rs426	0.83[YRI][hapmap]
rs62432857	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6460821	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6979760	0.87[YRI][hapmap]
rs7777369	0.85[ASN][1000 genomes]
rs7799490	0.83[YRI][hapmap]
rs7805116	0.88[CEU][hapmap];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv967453	chr7:11593345-11604917	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv10599	chr7:11602763-11604286	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
2	chr7:11602800-11606800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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