Variant report

Variant	rs6980646
Chromosome Location	chr8:125799442-125799443
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs3935197	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4871545	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1016502	chr8:125657664-125845074	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125794800-125800200	Weak transcription	HMEC	breast
2	chr8:125795200-125801000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:125795800-125802000	Weak transcription	Placenta	Placenta
4	chr8:125796000-125801600	Weak transcription	Primary B cells from cord blood	blood
5	chr8:125796400-125801800	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:125797400-125801800	Weak transcription	Left Ventricle	heart
7	chr8:125797400-125801800	Weak transcription	Spleen	Spleen
8	chr8:125797400-125801800	Weak transcription	K562	blood
9	chr8:125797400-125802200	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:125797800-125800000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr8:125798400-125800000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:125798800-125800000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr8:125798800-125801000	Weak transcription	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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