Variant report

Variant	rs6980746
Chromosome Location	chr8:66742176-66742177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:66741134..66743113-chr8:66750762..66752560,2	MCF-7	breast:
2	chr8:66741562..66743541-chr8:66752087..66754417,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000205268	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6980516	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6980588	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6989952	1.00[AFR][1000 genomes]
rs6996048	1.00[YRI][hapmap]
rs7001138	1.00[YRI][hapmap]
rs7001147	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1793412	chr8:66705321-66761366	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:66719400-66750000	Weak transcription	Hela-S3	cervix
2	chr8:66720400-66744800	Weak transcription	NHEK	skin
3	chr8:66725200-66747000	Weak transcription	NHDF-Ad	bronchial
4	chr8:66725400-66751200	Weak transcription	Fetal Heart	heart
5	chr8:66729000-66744800	Weak transcription	Gastric	stomach
6	chr8:66729400-66744800	Weak transcription	Spleen	Spleen
7	chr8:66729400-66749400	Weak transcription	Fetal Brain Male	brain
8	chr8:66731000-66752600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr8:66731600-66752600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr8:66731800-66752600	Weak transcription	Adipose Nuclei	Adipose
11	chr8:66732400-66745000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr8:66732400-66745000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:66732600-66751000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:66732600-66751000	Weak transcription	Fetal Lung	lung
15	chr8:66733000-66752000	Weak transcription	Fetal Intestine Small	intestine
16	chr8:66733400-66743800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:66734200-66742800	Enhancers	Primary T killer memory cells from peripheral blood	blood
18	chr8:66734800-66749000	Weak transcription	Small Intestine	intestine
19	chr8:66734800-66752600	Weak transcription	Left Ventricle	heart
20	chr8:66735000-66746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:66735000-66746600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr8:66738400-66746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:66738400-66746600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr8:66738600-66744800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr8:66738600-66752600	Weak transcription	Pancreas	Pancrea
26	chr8:66738800-66743400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr8:66739200-66744800	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr8:66739400-66744200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr8:66739400-66744200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
30	chr8:66739400-66745000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr8:66739400-66745000	Weak transcription	Thymus	Thymus
32	chr8:66739600-66744800	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr8:66739600-66744800	Weak transcription	Fetal Thymus	thymus
34	chr8:66739600-66749000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:66740000-66744600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:66740200-66742200	Enhancers	Primary B cells from cord blood	blood
37	chr8:66740200-66743600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:66740200-66745000	Enhancers	Primary T helper cells fromperipheralblood	blood
39	chr8:66740200-66745200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr8:66740200-66745400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr8:66740200-66745800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr8:66740200-66749000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr8:66740200-66752400	Weak transcription	Fetal Kidney	kidney
44	chr8:66740600-66742600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:66740600-66746800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr8:66741200-66746600	Weak transcription	A549	lung
47	chr8:66741400-66742200	Enhancers	Duodenum Mucosa	Duodenum
48	chr8:66741400-66747800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr8:66741600-66742200	Enhancers	Primary hematopoietic stem cells	blood
50	chr8:66741600-66742400	Enhancers	Stomach Mucosa	stomach

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