Variant report

Variant	rs6980902
Chromosome Location	chr8:103209741-103209742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:102503403..102505904-chr8:103208888..103211363,2	MCF-7	breast:
2	chr8:102658165..102659183-chr8:103208962..103210318,7	MCF-7	breast:
3	chr8:103044931..103046316-chr8:103209230..103210787,8	MCF-7	breast:
4	chr8:102345268..102345879-chr8:103209334..103209901,2	MCF-7	breast:
5	chr8:103204658..103207818-chr8:103209461..103212038,3	K562	blood:
6	chr8:102338887..102339423-chr8:103209592..103210278,2	K562	blood:
7	chr8:102619068..102621889-chr8:103209199..103211504,2	MCF-7	breast:
8	chr8:102339044..102339677-chr8:103209457..103210233,4	MCF-7	breast:
9	chr8:102345252..102346969-chr8:103208842..103210434,2	MCF-7	breast:
10	chr8:102671400..102672173-chr8:103209393..103210217,2	MCF-7	breast:
11	chr8:103208196..103211132-chr8:103214844..103217126,2	K562	blood:
12	chr8:102658241..102659174-chr8:103209354..103210263,6	MCF-7	breast:
13	chr8:102513354..102514192-chr8:103209647..103210273,2	MCF-7	breast:
14	chr8:103045077..103045953-chr8:103209208..103210205,5	MCF-7	breast:
15	chr8:102313542..102314283-chr8:103209426..103210117,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000254024	Chromatin interaction
ENSG00000083307	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1265147	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2607657	0.81[ASN][1000 genomes]
rs2607658	0.83[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2607659	0.83[CEU][hapmap];0.90[CHB][hapmap];0.83[ASN][1000 genomes]
rs2853229	0.90[CHB][hapmap];0.81[ASN][1000 genomes]
rs3931977	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4102400	0.84[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6468819	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020359	chr8:103109921-103318415	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv1021459	chr8:103163436-103401754	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv539701	chr8:103163436-103401754	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
5	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
6	nsv1018990	chr8:103207922-103357742	Genic enhancers Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv539702	chr8:103207922-103357742	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv1028890	chr8:103207922-103401754	Weak transcription Genic enhancers Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103209000-103209800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:103209000-103210000	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:103209200-103209800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:103209200-103209800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:103209200-103209800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:103209200-103209800	Flanking Active TSS	Brain Anterior Caudate	brain
7	chr8:103209200-103209800	Enhancers	Esophagus	oesophagus
8	chr8:103209200-103209800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
9	chr8:103209200-103209800	Active TSS	NHLF	lung
10	chr8:103209200-103210000	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:103209200-103210600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr8:103209200-103210600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:103209200-103210600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:103209200-103210600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr8:103209200-103210800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:103209400-103209800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:103209400-103209800	Active TSS	Primary T cells from cord blood	blood
18	chr8:103209400-103209800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
19	chr8:103209400-103209800	Flanking Active TSS	Primary hematopoietic stem cells	blood
20	chr8:103209400-103209800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr8:103209400-103209800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr8:103209400-103209800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
23	chr8:103209400-103209800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr8:103209400-103209800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr8:103209400-103209800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr8:103209400-103209800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr8:103209400-103209800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
28	chr8:103209400-103209800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr8:103209400-103209800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr8:103209400-103209800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
31	chr8:103209400-103209800	Enhancers	Primary T killer memory cells from peripheral blood	blood
32	chr8:103209400-103209800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr8:103209400-103209800	Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr8:103209400-103209800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:103209400-103209800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:103209400-103209800	Flanking Active TSS	Adipose Nuclei	Adipose
37	chr8:103209400-103209800	Active TSS	Aorta	Aorta
38	chr8:103209400-103209800	Active TSS	Brain Angular Gyrus	brain
39	chr8:103209400-103209800	Active TSS	Brain Cingulate Gyrus	brain
40	chr8:103209400-103209800	Active TSS	Brain Hippocampus Middle	brain
41	chr8:103209400-103209800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr8:103209400-103209800	Active TSS	Colon Smooth Muscle	Colon
43	chr8:103209400-103209800	Flanking Active TSS	Duodenum Mucosa	Duodenum
44	chr8:103209400-103209800	Active TSS	Duodenum Smooth Muscle	Duodenum
45	chr8:103209400-103209800	Flanking Active TSS	Fetal Brain Female	brain
46	chr8:103209400-103209800	Enhancers	Fetal Intestine Large	intestine
47	chr8:103209400-103209800	Enhancers	Fetal Intestine Small	intestine
48	chr8:103209400-103209800	Enhancers	Fetal Kidney	kidney
49	chr8:103209400-103209800	Active TSS	Pancreatic Islets	Pancreatic Islet
50	chr8:103209400-103209800	Flanking Active TSS	Fetal Muscle Leg	muscle

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