Variant report

Variant	rs6981056
Chromosome Location	chr8:124947404-124947405
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124934471..124936352-chr8:124945543..124948252,2	K562	blood:
2	chr8:124934852..124937473-chr8:124945543..124947894,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1007106	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs13250190	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs13260673	0.82[EUR][1000 genomes]
rs13268486	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs13268977	0.89[CEU][hapmap];0.82[CHB][hapmap]
rs16899052	0.82[EUR][1000 genomes]
rs16899082	0.82[EUR][1000 genomes]
rs16899083	0.82[EUR][1000 genomes]
rs34273310	0.81[EUR][1000 genomes]
rs35365805	0.82[EUR][1000 genomes]
rs35856179	0.83[EUR][1000 genomes]
rs36044469	0.82[EUR][1000 genomes]
rs4242349	0.85[CEU][hapmap]
rs4242350	0.82[EUR][1000 genomes]
rs4242351	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4299983	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs4299984	0.82[EUR][1000 genomes]
rs4410887	0.83[EUR][1000 genomes]
rs4413758	0.82[EUR][1000 genomes]
rs4428656	0.81[EUR][1000 genomes]
rs4492357	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4512365	0.82[EUR][1000 genomes]
rs4587312	0.81[EUR][1000 genomes]
rs4590427	0.82[EUR][1000 genomes]
rs4870877	0.81[CEU][hapmap]
rs4871427	0.82[CEU][hapmap]
rs4871428	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs4871429	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871430	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871431	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871432	0.89[CEU][hapmap];0.81[CHB][hapmap];0.82[EUR][1000 genomes]
rs4871433	0.89[CEU][hapmap];0.82[CHB][hapmap];0.82[EUR][1000 genomes]
rs4871434	0.90[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871435	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871436	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871437	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs4871439	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs55653196	0.83[EUR][1000 genomes]
rs55921480	0.88[ASN][1000 genomes]
rs57615673	0.84[EUR][1000 genomes]
rs59381180	0.82[EUR][1000 genomes]
rs62518695	0.82[EUR][1000 genomes]
rs62518696	0.81[EUR][1000 genomes]
rs62518727	0.81[EUR][1000 genomes]
rs62518728	0.82[EUR][1000 genomes]
rs6981229	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982351	0.83[EUR][1000 genomes]
rs6984557	0.96[CEU][hapmap];0.85[EUR][1000 genomes]
rs7464664	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7838453	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7838473	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7839327	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs7842762	0.96[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033617	chr8:124895516-125012783	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1035035	chr8:124895516-125020472	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv612141	chr8:124895809-125006490	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv612142	chr8:124896389-125006490	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv612143	chr8:124927711-124988267	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1020971	chr8:124939571-124973679	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124944000-124947800	Weak transcription	Stomach Mucosa	stomach
2	chr8:124944200-124948200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr8:124945800-124947600	Weak transcription	Fetal Heart	heart
4	chr8:124945800-124947800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:124946600-124947800	Weak transcription	NHDF-Ad	bronchial
6	chr8:124946800-124951800	Weak transcription	Right Ventricle	heart

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