Variant report

Variant	rs6981399
Chromosome Location	chr8:61615461-61615462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61590866..61593326-chr8:61611712..61615687,3	MCF-7	breast:
2	chr8:61563289..61565598-chr8:61614731..61616834,3	MCF-7	breast:
3	chr8:61612592..61618600-chr8:61619190..61622495,7	MCF-7	breast:
4	chr8:61612691..61616083-chr8:61619050..61621954,3	K562	blood:
5	chr8:61590260..61597729-chr8:61611560..61624694,18	MCF-7	breast:
6	chr8:61614401..61615964-chr8:61617449..61618958,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10957153	0.92[CHB][hapmap];0.96[CHD][hapmap];0.88[GIH][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs11989002	0.87[ASN][1000 genomes]
rs16926382	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6987676	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
5	nsv1027929	chr8:61569620-61617812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1017564	chr8:61577791-61617812	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases
7	nsv526196	chr8:61593569-61877623	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
8	nsv1019809	chr8:61597918-61624034	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	nsv539631	chr8:61597918-61624034	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv6219	chr8:61599770-61644558	Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61594200-61617600	Weak transcription	Hela-S3	cervix
2	chr8:61597000-61619800	Weak transcription	HMEC	breast
3	chr8:61598200-61619800	Weak transcription	HepG2	liver
4	chr8:61603400-61616200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr8:61603400-61620600	Weak transcription	Fetal Intestine Large	intestine
6	chr8:61603400-61626200	Weak transcription	Fetal Thymus	thymus
7	chr8:61606400-61620400	Weak transcription	Duodenum Mucosa	Duodenum
8	chr8:61607200-61619800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:61607400-61619800	Weak transcription	Fetal Lung	lung
10	chr8:61607400-61627000	Weak transcription	Spleen	Spleen
11	chr8:61607600-61615800	Weak transcription	Small Intestine	intestine
12	chr8:61607600-61616200	Weak transcription	Right Atrium	heart
13	chr8:61607600-61620400	Weak transcription	Fetal Muscle Leg	muscle
14	chr8:61608600-61615800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr8:61609200-61619800	Weak transcription	HSMM	muscle
16	chr8:61609200-61620400	Weak transcription	NH-A	brain
17	chr8:61610600-61620000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:61610800-61615600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:61612400-61617400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr8:61612600-61616200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr8:61612600-61616400	Enhancers	Fetal Heart	heart
22	chr8:61612600-61622000	Enhancers	Primary B cells from peripheral blood	blood
23	chr8:61612800-61616200	Enhancers	Primary B cells from cord blood	blood
24	chr8:61613000-61615800	Enhancers	Fetal Brain Male	brain
25	chr8:61613200-61616800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr8:61613400-61619800	Weak transcription	Gastric	stomach
27	chr8:61613600-61616200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr8:61613600-61616800	Enhancers	Brain Hippocampus Middle	brain
29	chr8:61613600-61616800	Weak transcription	Pancreas	Pancrea
30	chr8:61613600-61617800	Enhancers	Brain Anterior Caudate	brain
31	chr8:61613600-61619400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:61613600-61619800	Weak transcription	Stomach Mucosa	stomach
33	chr8:61613600-61620400	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr8:61613600-61620400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr8:61613600-61621000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:61613600-61621000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:61613600-61621000	Weak transcription	Lung	lung
38	chr8:61613800-61620400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr8:61614200-61615800	Enhancers	Pancreatic Islets	Pancreatic Islet
40	chr8:61614200-61616000	Enhancers	Rectal Mucosa Donor 29	rectum
41	chr8:61614200-61616200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr8:61614200-61616400	Enhancers	Psoas Muscle	Psoas
43	chr8:61614200-61617000	Enhancers	Sigmoid Colon	Sigmoid Colon
44	chr8:61614200-61619000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr8:61614400-61616400	Enhancers	Primary T helper naive cells from peripheral blood	blood
46	chr8:61614600-61615600	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr8:61614600-61615800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr8:61614600-61615800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr8:61614600-61617400	Enhancers	Right Ventricle	heart
50	chr8:61614600-61619000	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links