Variant report

Variant	rs6981402
Chromosome Location	chr8:121097644-121097645
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121082264..121084470-chr8:121096952..121099036,2	K562	blood:
2	chr8:120879060..120880090-chr8:121096532..121097875,8	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10090001	0.81[EUR][1000 genomes]
rs10101620	0.81[EUR][1000 genomes]
rs10101943	0.81[EUR][1000 genomes]
rs10505376	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808506	0.96[ASN][1000 genomes]
rs10955948	0.82[AMR][1000 genomes]
rs11780912	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11780985	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12114445	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542895	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12543907	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12545676	0.86[ASN][1000 genomes]
rs12548273	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16893478	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16893517	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17226296	0.96[ASN][1000 genomes]
rs2292946	0.81[EUR][1000 genomes]
rs2875928	0.81[EUR][1000 genomes]
rs2875931	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57868486	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60717250	0.86[ASN][1000 genomes]
rs60754245	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6469895	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs66507952	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs66614869	0.83[ASN][1000 genomes]
rs6986231	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6998730	0.81[EUR][1000 genomes]
rs7004815	0.81[EUR][1000 genomes]
rs7005228	0.81[EUR][1000 genomes]
rs7007998	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7013298	0.81[EUR][1000 genomes]
rs72675741	0.96[ASN][1000 genomes]
rs73315941	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7822662	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7822927	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7829116	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7833073	0.81[EUR][1000 genomes]
rs7841230	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7841621	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7843503	0.86[ASN][1000 genomes]
rs960887	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891418	chr8:120600965-121301474	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	esv3348294	chr8:121000288-121250984	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1025923	chr8:121093383-121108706	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121094400-121098000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:121095200-121101200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr8:121097400-121098800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:121097600-121101400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:121097600-121104400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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