Variant report

Variant	rs698171
Chromosome Location	chr5:127156760-127156761
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs122730	0.83[CEU][hapmap]
rs1421750	0.87[CEU][hapmap]
rs151855	0.81[CEU][hapmap]
rs151882	0.92[CEU][hapmap]
rs245158	0.83[CEU][hapmap]
rs245167	0.83[CEU][hapmap]
rs245181	0.92[CEU][hapmap]
rs245186	0.88[CEU][hapmap]
rs245192	0.92[CEU][hapmap]
rs245195	0.91[CEU][hapmap]
rs2764766	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033607	chr5:126385181-127304459	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1021483	chr5:126927834-127304873	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv4992	chr5:127151699-127196349	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv1797587	chr5:127156760-127196066	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:127150000-127159400	Weak transcription	Right Atrium	heart
2	chr5:127151000-127159000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:127151000-127161200	Weak transcription	HSMM	muscle
4	chr5:127151200-127156800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:127152400-127156800	Weak transcription	Colon Smooth Muscle	Colon
6	chr5:127154600-127158600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr5:127155400-127157200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:127156200-127159000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:127156400-127157200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr5:127156600-127156800	Enhancers	Fetal Kidney	kidney
11	chr5:127156600-127156800	Enhancers	Rectal Smooth Muscle	rectum
12	chr5:127156600-127156800	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr5:127156600-127156800	Active TSS	A549	lung
14	chr5:127156600-127157000	Enhancers	NHDF-Ad	bronchial
15	chr5:127156600-127157200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr5:127156600-127157400	Enhancers	Fetal Intestine Large	intestine
17	chr5:127156600-127157800	Enhancers	Stomach Mucosa	stomach
18	chr5:127156600-127158600	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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