Variant report

Variant	rs6982566
Chromosome Location	chr8:102984312-102984313
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs6982161	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7002630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018653	chr8:102818271-103009082	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv539700	chr8:102818271-103009082	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv831411	chr8:102937991-103108140	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:102965400-102989800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:102976000-102992000	Weak transcription	Right Ventricle	heart
3	chr8:102979400-102985600	Enhancers	Fetal Muscle Leg	muscle
4	chr8:102980000-102987200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:102980200-102988200	Weak transcription	Spleen	Spleen
6	chr8:102980800-102985400	Weak transcription	Fetal Heart	heart
7	chr8:102981000-102987400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:102981000-102992000	Weak transcription	Esophagus	oesophagus
9	chr8:102981400-102985000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr8:102981400-102989800	Weak transcription	Aorta	Aorta
11	chr8:102983000-102985000	ZNF genes & repeats	GM12878-XiMat	blood
12	chr8:102983400-102991400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:102983600-102985400	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr8:102983600-102985800	Weak transcription	Psoas Muscle	Psoas
15	chr8:102983600-102991200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr8:102983600-102992000	Weak transcription	Left Ventricle	heart
17	chr8:102984200-102986400	Enhancers	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links