Variant report

Variant	rs698278
Chromosome Location	chr1:224728985-224728986
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:224726760..224729001-chr1:224731332..224734709,3	MCF-7	breast:
2	chr1:224726920..224729754-chr1:224737664..224739555,2	K562	blood:
3	chr1:224726104..224729814-chr1:224730643..224733087,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10915686	1.00[ASW][hapmap];1.00[AFR][1000 genomes]
rs1587400	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17503938	1.00[CHD][hapmap]
rs56311718	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8868	chr1:224383023-224752531	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1014717	chr1:224551939-224885543	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv535311	chr1:224551939-224885543	Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:224712000-224730800	Weak transcription	Spleen	Spleen
2	chr1:224725200-224730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:224726800-224732400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:224727200-224729800	Enhancers	NH-A	brain
5	chr1:224727200-224731600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr1:224727200-224731600	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr1:224727400-224729400	Enhancers	Fetal Brain Male	brain
8	chr1:224727400-224729800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:224727400-224730800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr1:224727400-224731400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:224727600-224730200	Enhancers	HUVEC	blood vessel
12	chr1:224727600-224731000	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr1:224727600-224731600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr1:224727600-224731600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr1:224727600-224732800	Enhancers	HMEC	breast
16	chr1:224727800-224729200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr1:224727800-224729200	Enhancers	Fetal Lung	lung
18	chr1:224727800-224730400	Enhancers	Osteobl	bone
19	chr1:224727800-224731600	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr1:224727800-224731800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr1:224728000-224729200	Enhancers	Fetal Brain Female	brain
22	chr1:224728000-224729400	Enhancers	Brain Germinal Matrix	brain
23	chr1:224728000-224730600	Weak transcription	Pancreas	Pancrea
24	chr1:224728200-224729600	Enhancers	Primary hematopoietic stem cells	blood
25	chr1:224728200-224729600	Weak transcription	Brain Anterior Caudate	brain
26	chr1:224728200-224729800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr1:224728200-224729800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:224728200-224729800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:224728200-224730800	Enhancers	NHDF-Ad	bronchial
30	chr1:224728200-224732600	Enhancers	HSMM	muscle
31	chr1:224728400-224729200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr1:224728400-224732800	Enhancers	Dnd41	blood
33	chr1:224728600-224729000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr1:224728600-224729000	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr1:224728600-224729600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr1:224728600-224729600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr1:224728600-224730800	Weak transcription	Adipose Nuclei	Adipose
38	chr1:224728800-224730400	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links