Variant report

Variant	rs6982978
Chromosome Location	chr8:2102132-2102133
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17758377	0.91[AFR][1000 genomes]
rs17831780	1.00[EUR][1000 genomes]
rs1866718	1.00[EUR][1000 genomes]
rs2280901	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2280906	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280908	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280909	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2280910	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736654	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736655	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736656	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736657	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3736660	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4557726	0.81[AFR][1000 genomes]
rs60680720	1.00[EUR][1000 genomes]
rs62480009	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480010	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480011	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480012	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480013	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480014	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62480015	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480018	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62480019	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6998721	0.83[AFR][1000 genomes]
rs7013704	0.81[AFR][1000 genomes]
rs7832925	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889712	chr8:1591412-2337777	Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:2076000-2109600	Weak transcription	Right Atrium	heart
2	chr8:2093000-2103400	Weak transcription	Pancreas	Pancrea
3	chr8:2093000-2107200	Weak transcription	Gastric	stomach
4	chr8:2094000-2122400	Weak transcription	Right Ventricle	heart
5	chr8:2095400-2103200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr8:2096800-2102800	Weak transcription	Left Ventricle	heart
7	chr8:2097600-2104000	Weak transcription	Fetal Muscle Leg	muscle
8	chr8:2101000-2118000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr8:2101600-2102200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:2101800-2103800	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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