Variant report

Variant	rs6983411
Chromosome Location	chr8:8944161-8944162
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:8943472..8945578-chr8:8953667..8955933,2	MCF-7	breast:
2	chr8:8938481..8944528-chr8:8944977..8948023,6	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10093648	0.87[ASN][1000 genomes]
rs10105813	0.83[EUR][1000 genomes]
rs10503389	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13274593	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17646349	0.87[ASN][1000 genomes]
rs17646897	0.90[EUR][1000 genomes]
rs17703328	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17703572	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17703591	0.90[EUR][1000 genomes]
rs34277204	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34443356	0.87[ASN][1000 genomes]
rs34762233	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34968542	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35973329	0.87[ASN][1000 genomes]
rs36022127	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55686280	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6601283	1.00[ASN][1000 genomes]
rs6985627	1.00[ASN][1000 genomes]
rs6986226	1.00[ASN][1000 genomes]
rs6990455	1.00[ASN][1000 genomes]
rs6992247	1.00[ASN][1000 genomes]
rs7000799	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7007456	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7009724	1.00[ASN][1000 genomes]
rs7011476	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7018100	1.00[ASN][1000 genomes]
rs9650617	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9657508	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890331	chr8:8093240-8971100	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv917117	chr8:8621658-9313799	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv1022468	chr8:8857853-9209167	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv539460	chr8:8857853-9209167	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv817373	chr8:8857854-9361049	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv518456	chr8:8939125-8948469	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:8932600-8951800	Weak transcription	Pancreas	Pancrea
2	chr8:8932800-8945600	Weak transcription	Thymus	Thymus
3	chr8:8935400-8959600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:8938000-8945200	Weak transcription	Placenta	Placenta
5	chr8:8938000-8951800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:8938400-8945200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:8938400-8945200	Weak transcription	Primary B cells from cord blood	blood
8	chr8:8938400-8945200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr8:8940000-8945200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr8:8940000-8945200	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:8940000-8945200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr8:8940000-8945200	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr8:8940000-8945400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr8:8940000-8950000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:8940200-8945200	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr8:8940400-8945000	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr8:8940400-8945000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr8:8940400-8945000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:8940400-8945200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr8:8940400-8945200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:8940400-8945200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr8:8940400-8945200	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr8:8940400-8945200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr8:8940400-8945200	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr8:8940400-8945200	Weak transcription	Adipose Nuclei	Adipose
26	chr8:8940400-8945200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr8:8940400-8945200	Weak transcription	GM12878-XiMat	blood
28	chr8:8940400-8945200	Weak transcription	HMEC	breast
29	chr8:8940400-8945400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:8940400-8945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr8:8940400-8945400	Weak transcription	HSMM	muscle
32	chr8:8940400-8945600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr8:8940400-8945800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:8940400-8946000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr8:8940400-8951600	Weak transcription	Fetal Heart	heart
36	chr8:8940600-8945200	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr8:8940600-8945200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr8:8940600-8945400	Weak transcription	NHDF-Ad	bronchial
39	chr8:8940800-8945200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr8:8940800-8945200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:8940800-8945400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr8:8941000-8945000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr8:8941000-8945000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:8941200-8945400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr8:8942200-8944800	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr8:8942400-8945000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr8:8942600-8945200	Weak transcription	NH-A	brain
48	chr8:8942600-8946200	Weak transcription	A549	lung
49	chr8:8942800-8945000	Weak transcription	HUVEC	blood vessel
50	chr8:8942800-8945000	Weak transcription	NHEK	skin

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