Variant report

Variant	rs6983440
Chromosome Location	chr8:63131456-63131457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10957214	0.87[EUR][1000 genomes]
rs10957215	0.88[CEU][hapmap];0.80[YRI][hapmap];0.87[EUR][1000 genomes]
rs10957216	0.89[ASW][hapmap];0.88[CEU][hapmap];0.93[MEX][hapmap];0.96[TSI][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes]
rs12542333	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12542356	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12542382	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13252146	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13264311	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16928600	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16928602	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16928605	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34999742	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7015635	0.81[EUR][1000 genomes]
rs71525485	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7841048	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7841065	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7846571	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016883	chr8:63110741-63171354	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1030749	chr8:63114461-63156246	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:63130200-63131800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr8:63130600-63131600	Weak transcription	Brain Germinal Matrix	brain
3	chr8:63130600-63131800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr8:63131200-63131800	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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